>PF06537 (499 residues) YTDVTASGGATTTFDAGNSGHGFSTPAPNLGAAELAQHLEGDANFEMSFTTAPNAAHPEL DGLGPVFNNADCNSCHQRDGRNSTPSLGADKTRVKLGTDAGIFLRISKAPNQACTQGSAE NNYCAPIPVPDFGGQLFHRGVLKARADWQDHNFGGQADVYLSYERTTVTYADGGQVSLKK PIFEVENPYDAPRETKQSSNVTSNLLQDDVLMGWRNGMPVFGLGLLEAIPEAAILALVDE QDSNKDGISGKANWVFDAIKANAGDPNPVSLGRFGWKANTPSVRVQSLGALRGDIGITNP LFPEESIAGTSLHDSYLTRTGFVDTGVDVDGAPEASAKFSDDVVFYAETLAVPARRNVSN SEVREGAKLFTELNCSACHTPSFVTKTSGDIGGQPMIAALKGQTIYPFSDMLLHDMGDGL SDGRPDFLANGNEWRTRPLWGIGLTQTVNPQAGFLHDGRAATLEEAILWHGGEALASQQA FMGLDKAKRSQLVAFLMSL |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 | | | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | YTDVTASGGATTTFDAGNSGHGFSTPAPNLGAAELAQHLEGDANFEMSFTTAPNAAHPELDGLGPVFNNADCNSCHQRDGRNSTPSLGADKTRVKLGTDAGIFLRISKAPNQACTQGSAENNYCAPIPVPDFGGQLFHRGVLKARADWQDHNFGGQADVYLSYERTTVTYADGGQVSLKKPIFEVENPYDAPRETKQSSNVTSNLLQDDVLMGWRNGMPVFGLGLLEAIPEAAILALVDEQDSNKDGISGKANWVFDAIKANAGDPNPVSLGRFGWKANTPSVRVQSLGALRGDIGITNPLFPEESIAGTSLHDSYLTRTGFVDTGVDVDGAPEASAKFSDDVVFYAETLAVPARRNVSNSEVREGAKLFTELNCSACHTPSFVTKTSGDIGGQPMIAALKGQTIYPFSDMLLHDMGDGLSDGRPDFLANGNEWRTRPLWGIGLTQTVNPQAGFLHDGRAATLEEAILWHGGEALASQQAFMGLDKAKRSQLVAFLMSL | |||||||||||||||||||
1 | 3l4mA | 0.19 | 0.11 | 3.44 | 1.70 | SPARKS-K | --------------------------------ADDALAALGAQLFVDP-ALSRNATQ-------------SCATCH--------------------DPARAFTD-------------PREGKAGLAVSVGDDGQSHGD----------------------------------------------------------------------------RNTPTLGYA------------ALVPAFHRDAN---------------------GKYKGGQFWDGRADDLKQQAGQPMLNEMAMPDRAAVAARRDDPAYRTGFEALFGKGV----LDDPERAFDAAAEALAAYQATFSPFDSEEKFTPLEEFGYTVFITWNCRLCHMQ----RKQGVAER------------ETFTNFEYHNIGLPVNVDHGLLARPSGRFKVPSLRNVAVT------GPYMHNGVFTDLRTAILFYNKYTNLSLAELQSLDDGRVDALVAFLETL | |||||||||||||
2 | 3l4mA | 0.18 | 0.10 | 3.33 | 1.74 | FFAS-3D | --------------------------------ADDALAALGAQLFVDPALSRNATQ--------------SCATCH----------------------------------------------------------------------------------------DPARAFTDPREGKA---------------------GLAVSVGDDGQSHGDRNTPTLGYAALVPAFHR---------------------------------DANGKYKGGQFWDGRADDLKQQAGQPMLNEMAMPDRAAVAARLRDDPAYRTGFEALFGKG---VLDDPERAFDAAAEALAAYQATGEFSPFDEKFTPLEEFGYTVFITWNCRLCHMQRKQGVAER----------------ETFTNFEYHNIGLPVNDHGIEDPAQSGRFKVPSLRNVAVT------GPYMHNGVFTDLRTAILFYNKYTSRRPEAKIMLDDGRVDALVAFLETL | |||||||||||||
3 | 3l4mA | 0.19 | 0.11 | 3.49 | 3.51 | HHpred | --------------------------------ADDALAALGAQLFVDPALS--------RN------ATQSCATCHDPAR-AFTDPRE---------G-------------------------------K-AG---------LAV---------S-----------------------------------------------VGD--DGQSHGDRNTPTLGYAALVPAFHRD---------------------------A------NGKYKGGQFWDGRADDLKQQAGQPMLNEMAMPDRAAARLR-DDPAYRTGFEALFGKGV-----LDDPERADAAAEALAAYQATGFSPFDSEKFTPLEEFGYTVFITWNCRLCHMQRKQGVA----------------ERETFTNFEYHNIGLPVNHGLIEDPAQSGRFKVPSLRNVAVT------GPYMHNGVFTDLRTAILFYYTSRRLSLAEGLMLDDGRVDALVAFLETL | |||||||||||||
4 | 3o5cA | 0.20 | 0.11 | 3.52 | 1.16 | MUSTER | ---------------------EPIEVITPAKITEPEKVELGKMLFFEPRLSKSGFI--------------SCNSCHNLSTGGVDALPTS-----------------------------------------------------------------------IGHHWQEGP---------------------------------------------INSPTVLN------------ADFML---------------------------------AQFWDGRASNLKEQAAGPIANPKEMGFT--HELATETIASMPAYRARFAKVYGDEKVD-----IDRLTDAIAAFEKTLVTPNSPDAISGDAKAGYQLFKDKGCVSCHNGPAVGGTMFMKMGLIKPFHTNN-----------PAEGRKGVTGK---DADKFVFKVPTLRNIELT------YPYFHDGSVWTLEEAVNTMADIQLG-----QKLTEKETKEMVAFLNSL | |||||||||||||
5 | 3o5cA | 0.21 | 0.08 | 2.60 | 1.97 | CNFpred | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MLAQFWDGRASNLKEQAAGPIANPMGFTHELATETIASMPAYRARFAKVYGD---------EKVDIDRLTDAIAAFEKTLVTPNSPFAISGDAKAGYQLFKDKGCVSCHNGPAVGG---------------TMFMKMGFHTNNPAEGRKG---VTGKDADKFVFKVPTLRNIELT------YPYFHDGSVWTLEEAVNTMADIQL-----GQKLTEKETKEMVAFLNSL | |||||||||||||
6 | 3l4mA | 0.19 | 0.11 | 3.54 | 1.68 | HHsearch-2 | --------------------------------ADDALAALGAQLFVDPALS--------RN------ATQSCATCHDPA-RAFTDPRE--------------------------------------G--K-AG---------LAV---------S-----------------------------------------------VGD--DGQSHGDRNTPTLGYAALVPAFHRD---------------------------A------NGKYKGGQFWDGRADDLKQQAGQPMLNEMAMPDRAAARLR-DDPAYRTGFEALFGKG-V----LDDPERADAAAEALAAYQATGFSPFDSEKFTPLEEFGYTVFITWNCRLCHMQRKQGVA----------------ERETFTNFEYHNIGLPVNHGLIEDPAQSGRFKVPSLRNVAVT------GPYMHNGVFTDLRTAILFYYTSRRLSLAEGLMLDDGRVDALVAFLETL | |||||||||||||
7 | 6fu3A | 0.19 | 0.11 | 3.56 | 2.43 | Neff-PPAS | ------GEDQDLLKRAQGVFQPLPTEMQKIRPFTEEQVKLGHQLWYEPRLSKGNTV--------------SCNSCHNLASAGVDNMPTSQGHKGQFGG--------------------------------------------------------------------------------------------------------------------RNSPTALNAALL---------------------------------------------GSQFWDGRAADVEEQAGGPLVNPVEMANDS-QEAAAAKIAKVPEYQEMFKKAFP----EDGAVSFKNITTALGAFERTLLTPGNVNALSEQERKGVRAFMDNGCIACHNGVNLGGTTFQKFGLVQGPYWKFIEDPK------RDKGRADVTKKTEDE---FFFRVPGLRNVAKT------YPYFHNGSVWELDKAVTIMGKAQLG-----KDIPKEDVDNIVVFLNAL | |||||||||||||
8 | 3l4mA | 0.19 | 0.11 | 3.49 | 2.66 | HHsearch | --------------------------------ADDALAALGAQLFVDPALS--------RN------ATQSCATCHDPA-RAFTDPRE----------G------------------------------K-AG---------LAV---------S-----------------------------------------------VGD--DGQSHGDRNTPTLGYAALVPAFHRD---------------------------A------NGKYKGGQFWDGRADDLKQQAGQPMLNEMAMPDRAAARL-RDDPAYRTGFEALFGKG-V----LDDPERADAAAEALAAYQATGFSPFDSEKFTPLEEFGYTVFITWNCRLCHMQRKQGVA----------------ERETFTNFEYHNIGLPVNHGLIEDPAQSGRFKVPSLRNVAVT------GPYMHNGVFTDLRTAILFYYTSRRLSLAEGLMLDDGRVDALVAFLET- | |||||||||||||
9 | 3o5cA | 0.20 | 0.11 | 3.52 | 1.89 | PROSPECTOR2 | EPI---------------------EVITPAKITEPEKVELGKMLFFEPRLSKSGFI--------------SCNSCHNLSTGGVDALPTSIGHHWQEGP--------------------------------------------------------------------------------------------------------------------INSPTVLNADF---------------------------------------------MLAQFWDGRASNLKEQAAGPIANEMGFTHELATETIASMPAYRARFAKVYGDEKVDI---------DRLTDAIAAFEKTLVTPNKQDAISGDAKAGYQLFKDKGCVSCHNGPAVGGTMFMKMGL-----------IKPFHTNNPAEGRKGVTG---KDADKFVFKVPTLRNIEL------TYPYFHDGSVWTLEEAVNTM-----ADIQLGQKLTEKETKEMVAFLNSL | |||||||||||||
10 | 3l4mA | 0.18 | 0.10 | 3.19 | 1.95 | SAM | ---------------------------------DDALAALGAQLFVDPALSRNATQ--------------SCATCHDPARAFTDPREG----------------------------------------------------------------------------------------------------------------------DDGQSHGDRNTPTLGYAALVPAFHRD-----------------------------------GKYKGGQFWDGRADDLKQQAGQPMLNEMAMPDRAAVAARLDDPAYRTGFEALFGKGVL----DDPERAFDAAAEALAAYQATGFSPFDSEKFTPLEEFGYTVFITWNCRLCHMQRKQGVA----------------ERETFTNFEYHNIGLPVDHGLIEDPAQSGRFKVPSLRNVAV------TGPYMHNGVFTDLRTAILFYNKYTS-----GLMLDDGRVDALVAFLETL | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |