>PF06503 (360 residues) MERSSREHSKYSKANTLNETYQMRMYKDDSTPDYCYSEISVGLSSSSPKMSLSDYFSAVS VTYGDEARLDEYKPLLYSDLLFAESYELDVDINLLVWQLLSSNQDSKSLCVNVLRMLHTY SLGNAYMGGGIYHFSQGTNTETLSDIVDILRLIGRLAKIIIKTKFSQMELKCVQTHLIYY FTGKAYKSLSLSWDSKSILSTSNGYSTSEGLLDYYIRNKLDLFKALYSKNLVYGGNYYLI YQVLVYYYIITNGRYSTGFNLRKDSIKHYNIPNDNPKMCNSILPRKPNLSMMYIRAILIM VMIKDYSPIKLVPLYLNALEIEDPAYMSSRITDGGIRMETDNMASTPDISRVLPAYFNGV |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | MERSSREHSKYSKANTLNETYQMRMYKDDSTPDYCYSEISVGLSSSSPKMSLSDYFSAVSVTYGDEARLDEYKPLLYSDLLFAESYELDVDINLLVWQLLSSNQDSKSLCVNVLRMLHTYSLGNAYMGGGIYHFSQGTNTETLSDIVDILRLIGRLAKIIIKTKFSQMELKCVQTHLIYYFTGKAYKSLSLSWDSKSILSTSNGYSTSEGLLDYYIRNKLDLFKALYSKNLVYGGNYYLIYQVLVYYYIITNGRYSTGFNLRKDSIKHYNIPNDNPKMCNSILPRKPNLSMMYIRAILIMVMIKDYSPIKLVPLYLNALEIEDPAYMSSRITDGGIRMETDNMASTPDISRVLPAYFNGV | |||||||||||||||||||
1 | 6djyA | 0.12 | 0.08 | 2.87 | 0.72 | SPARKS-K | --------------------------------------MTLTYWDKEKRMTLKQMIQQVAINEQENELTHYVFTTPLSMPTFGKPMLGYVPLNVATSKFFSNDFDRD----NQLAMAH---FPDTTITQA-YNLTNSIDTSLPDAEVAALKWFWKFFTSI--NLVRQPPMDNVMYWACQFLSGTSFRDVEIVFSG---------FKGSHICMFSNLRILCPYYDLITNFKTTYHEELKSLLTYLCLCTIVGLCDTFTETRNMDTGEYVWKVRDVVSR--NHTPAQNTIQNAKYMIQLVHVLLFPLTDNK--------------------------------------------------- | |||||||||||||
2 | 3f5cA | 0.12 | 0.07 | 2.54 | 0.63 | FFAS-3D | ------------------------------------------------------------------------------------------SIPHLILELLKCEPDEPQVQAKIMAYLQQEQSNR-------------NRQEKLSAFGLLCKMADQTLFSIVERELKVDDQMKLLQNCHIYRQVAHGKEGTIFLVTGEHVDYSTIISHTEVAFNNLLSLAQELVVRLRSLQFD-------QREFVCLKFLVLFSSDVKNLENLQAALLDYTVCPQQTEKFGQLLLRLPELRAISKQAEDYLYYKHVNGDVPYNNLLIEMLHAKR------------------------------------- | |||||||||||||
3 | 6h3pA | 0.13 | 0.06 | 2.20 | 0.33 | HHpred | ----------------------APAYAPA-----AT--A--G------EHSLVEFFVRAHYQFPQDLPSPLFPTKPSPKVL-HP-FASLVTVNDAIWKMFTVDGDTVALDLACLQVLSQR------IHIGKYVAEVKFK--DAPQEYSRLIKSNSLMDMLTFKAVEEKVKKRVEKKARTFG--QNV---TLDDNAT---AGDSECKVDPKVLSKLYDQWVPLTKDV-------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
4 | 2pffB | 0.13 | 0.12 | 4.31 | 0.61 | MUSTER | LSHGSLEHVLLVPTASFFIASQLQEQFNKILPEP--EGFAADDEPTTPAELVGKFLGYVS-SLVEPSKVGQFDQVLNLCLEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARINSALFRAAQLVAIFGGQGNTDD-YFEELRDLYQTYHVLVG-----DLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDK--DYLLS----IPISCP--------LIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNLPPSILEDSLENEGVPSPMLSISNLTQEQDYVNKTPAGKQVEISLVNGA | |||||||||||||
5 | 3vw5A | 0.07 | 0.04 | 1.71 | 0.73 | CNFpred | -------------------------------------------------------------------------------------------HSRILWFYSNAYDELLDNAKHAYEFIKNNCIDYGGV---YWMMDFEGKPADTKHTYNIAFAIYALSSYYRAS--GDKEALALAYRLFEDIEKNTLYGYREAFDRQWRLVDNEALSKADKTMNAILHLIEAYTELYKA-----DGNEKVADRLKFQLGQMRDI----VYTPDTNALKVFFDTAFNLV------GDIHSYGHDIEATWLMDRACDVLGDEDLKKQFAEMDL---------------------------------------- | |||||||||||||
6 | 2pffB | 0.13 | 0.12 | 4.03 | 0.80 | HHsearch-2 | MDAYSTRPLTLSIASLQEQFN--KILP-E--PTEGFAADD---EPTTPAELVGKFLGYVSS-LVEPSKVGQFDQVLNLCLTFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKITARIMAKRPFDLFLVAIFGGQGNTDD---YFEELRDLYQTYHV-----LVGDLIKFSAETLSELIRTTLDAEKILEWLENPSNTPDKDYLLSIPISC-PLIGVIQLAHYVVTAKL-------------------------LGFTPGRSYKGATGHSQGLVTAVA-IAEWSFFVSVRKAITVLFFIGVRCYEAYPPPSILEDSLENNEGVPSPSNLTQEQVQDYVNHLPAKQVELPVASPFHSHL | |||||||||||||
7 | 3zheA | 0.11 | 0.11 | 3.87 | 0.77 | Neff-PPAS | DGDCTSSINKLWIVGYYHPFQFFIRDKEKNMAIAVLLTMFCGELQEMLSLPDDKYPALWNMYIGDFHRPDEEIQKCLAVGYYSRAIDLDPNQGRAFHVLAGLRADLNVAQKLRLMILGQLADAPYKKGTELLEYLKFPQKE------STDKLMVDFVIWALNEKSKRMDYQMTGIKIVNEFKADWSLIMSTCRLASKLAMKKFGFQQFYNCFDTISTLYITIYSRTIS---------SKCLLAEAISWISDSAEILGHLDEQKNEPHFQKLS----VFAKTKWNELNDLVMNHINSVFTSMSLTINPSISMTSFLLNGPISEPNVEFLSQLINYLVSVEFPPMEIIHDREESGPLLRRIN | |||||||||||||
8 | 1vt4I3 | 0.11 | 0.07 | 2.52 | 0.90 | HHsearch | -------------------------------------------EYALHRSIVDHYNIP--KTFDSDDLPPYLDQYFYSHIHHLKNIEHFLDFRFLEQKIRHDSTAWNASILNTLQQLKFYKPY--------------ICDNDPKYERLVNAILDFLPKIEENLICSKDLLRIALMAEDEAIFEEAHKQVQRGGGGGGG----GGGGGGGG--------------------GGGGGGGG-----------------GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG------GGGGGGGGGGG--------G---GG-GGGGGGGGGGGGGGGGGGGGGGG-------- | |||||||||||||
9 | 6etxG | 0.11 | 0.11 | 3.97 | 0.53 | SP3 | MPKSAIDENQLSRLHMILKPFMLRRIKKDVENELDKIEILMYCQLTSRQKLLYQALKNLVMQFRKVCNHPELFERQETWSPFHISLKPHISKFIYRHGQIRVFNHSRDRWLRVLSPFAPDYIQRSLFHRKGINEESCFSFLRFIDISPAEMANLMLQGLLARWLALFLSLKASYRLHQLRSWGAPEGESHQRYLRNKDFLLGVNFPLSFPNLCSCPLLKSLVFSSHCKAVSGYSDQVVHQRRS-ATSSLRRCLLTELPSFLCVASPRVTAVPLD--SYCNDRSAEY-ERRVLKEGGSLAAKQCLLNGAPELAADWLNRRSQFFPEPA------GGLWSIRPQNGWSFIRIPGKESLITDS | |||||||||||||
10 | 5ugqA | 0.09 | 0.07 | 2.89 | 1.00 | PROSPECTOR2 | VERP-----------GGALCGKLAVYDRPDGDVAALALIRFPATGDKPGESGIEAALGVFQTLPKRVHEPAIWCNSDADNDRLRAEPQVDYSREGVAHIENETKQFVGRCVDLDAIRAALGDDKLTYVRAILDGAVDPNADPIEAELRQAKGFQDAFNNYAALGADPAKAVEVYHSLVDPLVDPD------NPRISRPARTKDPRGLSYSDAIVGT---------------IALYSPNLWQHLTDGLSELVDNRGDTLL----------------ALADYRRDSHGRYNNSGDARVAINCVDQPPVTDRDKVIDEDRRAREIAPFSYGKFTGDAPLGTCAFWPVPPTSQPHAVSAPGLVC | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |