Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240 260
| | | | | | | | | | | | | |
| Seq | LAAVLLSEMGQLGARDLLALVGIVVLRTALSNRLAKVQGFLFRAAFLRRVPLFFRLISENIILCFFLSTIHSTSKYITGTLSLHFRKILTKLIHSHYFENMVYYKMSHVDGRITNPEQRIASDVPRFCSELSEIVQDDLTAVADAVLYTWRLCSYASPKYVFWILAYVLGAGTVMRNFSPSFGKLMSREQQLEGEYRQLHSRLRTHSESIAYYGGERREESHIQQKFKTLVRHMKIVLHDQWWFGMIQDLLLKYLGATVAVILIIEPFF |
1 | 5uj9A3 | 0.08 | 0.08 | 3.09 | 1.75 | SPARKS-K | | SLKRLRVFLYWDYMKAIFLSIFLFLCNHVASLVSNYWLSLWTDDIVNGTQEHTQVRLSVYGALGISQGITVFGYSMAVSIGGIFASRRLHLDLLHNVLRPISFFERTPS----GNLVNRFSKELDTVDSMIPQVIKMFMGSLFNVIGACIIILLAT-PMAAVIIPPLGLIYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIRQSDLKVDENQKAYYPSIVANRWLAVRLECVGNCIVLFASLFAVISRHS |
2 | 3qf4B1 | 0.14 | 0.13 | 4.59 | 2.53 | FFAS-3D | | -LRRLLGYLRPHT-FTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFPRRFDLLPRYMLILGTIYALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDR---TPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRV-NVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALIGTIATFIPL- |
3 | 4ry2A | 0.12 | 0.12 | 4.17 | 2.72 | HHpred | | MMVKFAGFLKPLKKTVL-CIFLASLLYTALGIAGSFYIKFLFDDLKFEKLNDLHIISAGFAVIFLLQIFLNYYRSILVTKLGMSIDKSIMMEYYSHVLKPMNFFNSR----KVGEIISRF-MDASKIRQAISGATLTIMIDTIMAVIGGILLYI-QNSSLFFISFIIILLYGIIVTVFNKPIQNANRQIMEDNAKLTSALVESVKGIETIKSFGAEEQTEKSTRDKIETVMKSSFKEGMLYINLSSLTGIVAGLG-GIVILWAGA---- |
4 | 4pl0A1 | 0.11 | 0.10 | 3.80 | 1.44 | MUSTER | | LFNYIYSLMDVRGKFLFFSMLFITSLSSIIISISPLILAKITDLLSGSLYEYLVLLACLYMFCVISNKASVFLFMILQSSLRINMQKKMSLKYLRELYNNITNLS----KNNAGYTTQSLNQASNDIYILVRNVSQNILSPVIQLISTIVVVLSTKDWFSAGVFFLYILVFVIFNTRLTGSLASLRKHSMDITLNSYSLLSDTVDNMIAAKKNNALRLISERYEDALTQENNAQKKYWLLSSKVLLLNSLLAVILFGSVFIYNILGVLN |
5 | 4f4cA | 0.08 | 0.08 | 3.09 | 1.37 | CNFpred | | SIPQLYRYTTTLEKLLLFIGTLVAVITGAGLPLMSILQGKVSQAFINEFEHDVMNVVWSYAAMTVGMWAAGQITVTCYLYVAEQMNNRLRREFVKSILQEISWFDTNH----SGTLATKLFDNLERVKEGTGDKIGMAFQYLSQFITGFIVAFT-HSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYELERYSTAVEEAKKAGVLKGLFLGISFGAMQASN-FISFALAFYIGVGWVH |
6 | 2yl4A | 0.16 | 0.15 | 5.09 | 1.24 | HHsearch-2 | | EARKLLGLAYPERR-RLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTDNLTRLCLGLSAVFLCGAAANAIRVYLMQTSGQRIVNRLRTSLFSSILREVAFFDKT----RTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFF-VSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGATGLSG-NLIVLSVLYKGGLLMG |
7 | 4pl0A1 | 0.12 | 0.12 | 4.11 | 1.51 | Neff-PPAS | | LFNYIYSLMDVRGKFLFFSMLFITSLSSIIISISPLILAKITDLLSGSLSNFSYEYLVLLACLYMFCVISNKASVFLFMILQSSLRINMQKKMSLKYLRELYNENITNLSNNAGYTTQSLNQASNDIYILVRNVSQNILSPVIQLISTIVVVLSTKDWFSAGVFFLYILVFVIFNTRLTGSLASLRKHSMDITLNSYSLLSDTVDNMIAAKKNNALRLISERYEDALTQENNAQKKYWLLSSKVLLLNSLLAVILFGSVFIYNILGVLN |
8 | 2yl4A | 0.16 | 0.16 | 5.19 | 1.98 | HHsearch | | EARKLLGLAYPERRR-LAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTDNLTRLCLGLSAVFLCGAAANAIRVYLMQTSGQRIVNRLRTSLFSSILREVAFFDKT----RTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFF-VSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGATGLSG-NLIVLSVLYKGGLLM- |
9 | 4pl0A1 | 0.10 | 0.10 | 3.59 | 1.91 | PROSPECTOR2 | | LFNYIYSLMDVRGKFLFFSMLFITSLSSIIISISPLILAKITDLLSGSLSNFLVLLACLYMFCVISNKASVFLFMILQSSLRINMQKKMSLKYLRELYNNITNLS----KNNAGYTTQSLNQASNDIYILVRNVSQNILSPVIQLISTIVVVLSTKDWFSAGVFFLYILVFVIFNTRLTGSLASLRKHSMDITLNSYSLLSDTVDNMIAAKKNNALRLISERYEDALTQENNAQKKYWLLSSKVLLLNSSYIILLSTPVENIGALLSEI |
10 | 3g61A1 | 0.07 | 0.06 | 2.61 | 2.31 | SAM | | --LTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNEEMTTYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNEIGWFDVH----DVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFF-SGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQA------------------- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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