>PF06466 (251 residues) RIQQRKQQVFNWPQLKKLLKLANYSACQVDECKCNGWKNAQPLTKSPKNDMQQPAANFSD PCRSCTHVLENHITHLQAQSDDEINKLLGMVVDVDNIFMGMHREEDPDTKKVYYYLFKLL RKCILSMTKPMIEGPLGQPPFERPSIAKAITNFVLYKFGHLSQREWQAMYDLAKMFLHCL NHWNFETPSARRTAVNADEAPAYKINYTRWLVFCHVPAFCDSLPHYDTTLVFGRTLLQAV FKSVCRQLMDK |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 | | | | | | | | | | | | | |||||||||||||
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Seq | RIQQRKQQVFNWPQLKKLLKLANYSACQVDECKCNGWKNAQPLTKSPKNDMQQPAANFSDPCRSCTHVLENHITHLQAQSDDEINKLLGMVVDVDNIFMGMHREEDPDTKKVYYYLFKLLRKCILSMTKPMIEGPLGQPPFERPSIAKAITNFVLYKFGHLSQREWQAMYDLAKMFLHCLNHWNFETPSARRTAVNADEAPAYKINYTRWLVFCHVPAFCDSLPHYDTTLVFGRTLLQAVFKSVCRQLMDK | |||||||||||||||||||
1 | 1vt4I | 0.12 | 0.12 | 4.04 | 1.44 | HHsearch-2 | NIKLRIHSIQ--AELRRLLKSKPYENCLLVLLNAKAWNAFNLSCKILLTTRFKQFLSAATTTLDCRPQDLPR--EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLRKMFDRLSKYLVEKQPKESTISIPSIYLELKVKLENEYAL--HRSIVDHYNIPKTFDSHHHLKNIEHP---------ERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF----YKPYICDN | |||||||||||||
2 | 1vt4I3 | 0.09 | 0.07 | 2.58 | 1.06 | HHsearch | --------EYAL------------------------------HRSIVDHYNPKTFDSDDLIPPYLDQYFYSHIHHLKNIEHPERMTLFRMVFDFRFLEQKIRHDSTSILNTLQQLKFYK----------PYIC-----DN--DPKYERLVNAILDFLPKIE---ENLICSKYTDLLRIALMAEDEAIFEEAHKQVQRGGGGGGG---GGGGGGGGGGGGGGGGGG-GGGGGGGGGGGGGGGGGGGGGGGG- | |||||||||||||
3 | 5cwpA | 0.07 | 0.06 | 2.34 | 0.75 | SPARKS-K | SDEEEARELIEREAAERAQEAAERTG----------------------------DPRVRELARELKRLAQEAAEEVKRDPSEALKLIVEAIEAAVRALEAAERTGDPEVRELARELVRLAVEAAEEVQRNPSSSDVNEALKLIVEAIEAAVRALEAAERTGDPEVRELARELVRLAVEAAEEVQRNP--------SSEEVEALKKIVKAIQEAVESLREAESGDP------EKREKARERVREAVERAEEV | |||||||||||||
4 | 3qwvA2 | 0.13 | 0.08 | 2.92 | 0.83 | FFAS-3D | --EDRNDRLRD----------SYFFTCE---CECTTKDKDKAKVEVRKLSSPPQAEAIRDMVRYARNVIEEFRRAKHYKSPSELLEICELSQEMYQAMGVCLYMQDEGALKYGQKIIKPYSKHY---------------PVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIME---------------------------------------------------VAHGKD--HPYISEIKQEI--- | |||||||||||||
5 | 1vt4I | 0.10 | 0.10 | 3.53 | 0.40 | HHpred | RIHSIQAELRRLVQNAKAWNAFNLSCKILLTTRVTDFLSALDHHSMTLTPDE--VKSLLLKYLDCRPQDLPR--EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLRKMFDRLSIPTILLSL--IWFDVIKSDVMVVVNKLHKYSLVEKKEPSIYLE---LKVKLENHYNIPKTFDSDDLIHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDN---- | |||||||||||||
6 | 2z6bA | 0.09 | 0.09 | 3.35 | 0.62 | MUSTER | VLNQGGEVGYDSSSNVIQDSNLDTAINPDDR-PLSEIPTDDNPNMSMAEMLRRDEGLRLKVYWDTEGYPTIGIGHLIMKQPVRDMAQINKVLSKQVGREITGNPGSITMEEATTLFERDLADMQRDIKSHSKVGPVWQ---VNRSRQMALENMAFQMGVGGVAKFNTMLTAMLAGDWEKAYKAGRDSLWYQQTKGRASRVTMIILTGNLESYGVEVKTPARSLLAMAATVAKSSDPADPPIPNDSRILFKE | |||||||||||||
7 | 1z3hA | 0.05 | 0.04 | 1.63 | 0.75 | CNFpred | --------------------------------------------------------------------LKTVDEQITANNKASLNILFDVLLVLIKLYYDFNCQDPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPK----------YDILVSKSLSFLTAVTRIPKYFEIF--------NNESAMNNITEQIILPNVTL | |||||||||||||
8 | 1vt4I3 | 0.13 | 0.08 | 2.61 | 0.84 | HHsearch-2 | --------EYA------------------------------LHRSIVDHYNPKTFDSDDLIPPYLDQYFYSHIHHLKNIEHPERMTLFRMVF----------------------LDFRFLEQKIRHDSTAASGSIL--------NTLQQLKFYKPYICDND-----PKYERLVNAILDFLPK-------IE-----------------------------ENLICSKYTDLLRIALMAEDEAIFEEAHQRG | |||||||||||||
9 | 5cwpA | 0.07 | 0.06 | 2.49 | 0.83 | Neff-PPAS | MSSDEEEARELIERAKEAAERAQEAAERTGD------------------------PRVRELARELKRLAQEAAEEVKRDPNEALKLIVEAIEAAVRALEAAERTGDPEVRELARELVRLAVEAAEEVQRNPSSSDVNEALKLIVEAIEAAVRALEAAERTGDPEVRELARELVRLAVEAAEEVQRNP-------SSEEVNEALKKIVKAIQEAVESLREAEESGD-PEKREKARERVREAVERAEEVQRDP | |||||||||||||
10 | 1vt4I | 0.15 | 0.12 | 4.15 | 1.06 | HHsearch | NIKLRIHSIQ--AELRRLLKSKPYENCLLVLLNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH---HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTNPRRL---SIIAESIRDGLATWD-----------------------NWK-----HVNCDKLTTIIESSLNVLKMFDRLSVFPPSAHIPTLIWFDVIKSDVMLHKYSLVEKQPKESTSIP-----SIY----LELKVKLHRSIVDH- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |