>PF06437 (414 residues) MTTRYRVEYALKTHRRDQFIEWIKGLLAVPFVLHSQPTGVFESRNGTIGEMAEIAHRRYA EIMQDVEDMIDDHIAHQKVGLGGQSKLKLLVPSIGTFFTRLPLADAFRYQDKKRFISSRR FVPPSFNDIRVILNTAQLMGVTSAGSVDLATFDGDVTLYDDGKSLEPTNPVIERIINLMS HNTKIGIVTAAGYTEADKYYGRLHGLLEAIKASKILTPEQKKNLLVMGGESNFLFTYDAN SPHLLTHYQRRSWILPSMSTWTQPSITALLDLAESSLRECVTNLALPATILRKERAVGII PREPGFKFARESLEETVLVVQKKLEMSEVGRALPFCAFNGGNDVFVDIGDKSWGVLVCQK FFGGNVEDENQWIKRERTLHVGDQFLSAGSNDFKARVVGTTAWIASPTETVELL |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | MTTRYRVEYALKTHRRDQFIEWIKGLLAVPFVLHSQPTGVFESRNGTIGEMAEIAHRRYAEIMQDVEDMIDDHIAHQKVGLGGQSKLKLLVPSIGTFFTRLPLADAFRYQDKKRFISSRRFVPPSFNDIRVILNTAQLMGVTSAGSVDLATFDGDVTLYDDGKSLEPTNPVIERIINLMSHNTKIGIVTAAGYTEADKYYGRLHGLLEAIKASKILTPEQKKNLLVMGGESNFLFTYDANSPHLLTHYQRRSWILPSMSTWTQPSITALLDLAESSLRECVTNLALPATILRKERAVGIIPREPGFKFARESLEETVLVVQKKLEMSEVGRALPFCAFNGGNDVFVDIGDKSWGVLVCQKFFGGNVEDENQWIKRERTLHVGDQFLSAGSNDFKARVVGTTAWIASPTETVELL | |||||||||||||||||||
1 | 4bndA | 0.15 | 0.08 | 2.70 | 1.09 | SPARKS-K | ------------------------------------------------------------------------------------------------------------------------------------------------KMKKILSFDIDNTLNEPKMPIFP--EMAELLATLSQK-YIIAPISGQKYDQFLIQI------------INNLPESANL------DNFHLFVA----QGTQYYAHKAGEWKQVFNYALTDEQANAIMGALEKAAKELESVLLPGDEINENRESIAYSAIGQKAGVDMTKRNEIAKLASQYA------PEF---EFEVAGTTTINGFNKEFGMNHLMEELN---------VTKEEILYFGDMTQP-GGNDYPVVQMIETITVRDWKETAAIL | |||||||||||||
2 | 4bndA | 0.15 | 0.08 | 2.77 | 1.14 | FFAS-3D | ------------------------------------------------------------------------------------------------------------------------------------------------KMKKILSFDIDNTLNEPKMPIFP--EMAELLATLSQKYIIAPISGQKYDQFLIQIINNLP------------ESANLDNFHLFVAQGTQYYAH-----------KAGEWKQVFNYALTDEQANAIMGALEKAAKELESVLLPGDEINENRESMIAYAIGQKAGVEAKQAMTKRNEIAKLASQY-----APEFEFEVAGTTTINGQNKEFGMNHLMEELN---------VTKEEILYFGDMT-QPGGNDYPVVQGIETITVRDWKETAAIL | |||||||||||||
3 | 4ofzA | 0.12 | 0.09 | 3.34 | 1.40 | PROSPECTOR2 | QTVDKNLMYKMQETRRADDVEILKRAYE---KLTDNFQREMCTLTTKLSVNIGDETRG----LEKDLKYLDALMNIRREEPNLLDLFSILANYH-----PKGKETFLKEYEDT------------VKFLKTFISSEAIT-----GKKPIFITDWDGTMKDYCSQYATNLRFAASFTRISAV-LTAGPLRGPGILDLTA--------------------------------------MPIDGPVMFSEWWLSGKRVVHQDGITDEGFNALQRLDDEMKDLLHTSPFALSGVQRKVDRLTLGVQTVCHHVTSELSNRYQMAVKERM------HNSQILVFDPSTELEVEVWNKGNGVERLIKSLGDSLQ------SPGKILICGD-----TLSDIPMVRQVLAIFVGAKMSLREEV | |||||||||||||
4 | 4bndA | 0.17 | 0.09 | 2.93 | 1.55 | HHpred | ------------------------------------------------------------------------------------------------------------------------------------------------KMKKILSFDIDNTLNEPKMPIFP--EMAELLATLSQK-YIIAPISGQKYDQF---LIQI---INN------LPESNLDNFHLFVAQGTQYYAHK-----------AGEWKQVFNYALTDEQANAIMGALEKA----AKELGHDESLLPGDR-ESMIAIGPD-MTKRNEIAKLA-------S-----QYAPEFEFEVAGTTTINGFNKEFGMNHLMEELN---------VTKEEILYFGDMTQP-GGNDYPVVQMIETITVRDWKETAAIL | |||||||||||||
5 | 4bndA | 0.17 | 0.09 | 3.03 | 0.79 | MUSTER | ------------------------------------------------------------------------------------------------------------------------------------------------KMKKILSFDIDNTLNEPKMPIFP--EMAELLATLSQK-YIIAPISGQK----------YDQFLIQIINNLPESANLDNFHLFVGT--------------QYYAHKAGEWKQVFNYALTDEQANAIMGALEKAAKELWDESVLLEINENRESMIAYSAIGQKAGVAKQAWMTKRNEIAKLASQYAPE----FEFEVAGTT-TINGFNKEFGMNHLMEELN---------VTKEEILYFGDM-TQPGGNDYPVVQMGETITVRDWKETAAIL | |||||||||||||
6 | 4zevA | 0.16 | 0.08 | 2.73 | 1.00 | CNFpred | -------------------------------------------------------------------------------------------------------------------------------------------------EIKIIFTALDGTLLNSENKVS--EQNLESLIRAQEKGIKVVIATGRSIFSVENVIGEHVK-------KNRIS---LLPGIYMN----GCVTFDEKGSRVIDRI------------MNNDLKMEIHEFSK-CIREYMEVEALNPDVIE-LTVYKVLFSL-----PENILENTLKLCREKFSH------RINVANTFQSYVELFHQNKFEGVKEICKYY---------NISLNNALAMGDGE-----NDIEMLSLTHSVGVHNASEKVKNS | |||||||||||||
7 | 4ofzA | 0.11 | 0.09 | 3.37 | 1.08 | FFAS-3D | ----KNLMYKMQETRRFALLDDVEIL---KRAYEKLTDNFQREMCTLTTKLSVNIGDETRGLEKDL-KYLDALMNIRREEPN------------------LLWPIIMSRVDLFSILANYHPKGKELKEYEDTVKFLKISSEAITGKKPIFITDWDGTMKDYCSQYATNPVYSAVGMTRFAATRISAVLTAGPLRG--------PGILDLTAMPID------GPVMFSGSWGREWWL--------------SGKRVVHQDGITDEGFNALQRLDDEMKDLLHTSPFVGSGVQRKVDRLTLGVQTVCHHVTSELSNRYQMAVKERM------HNSQILVFDPSTELEVEVWNKGNGVERLIKSLGDSLQSPG------KILICGD-----TLSDIPMVRQALAIFVGAKMSLREE- | |||||||||||||
8 | 4bndA | 0.15 | 0.08 | 2.68 | 0.86 | HHsearch-2 | ------------------------------------------------------------------------------------------------------------------------------------------------KMKKILSFDIDNTLNEPKMPIFP--EMAELLATLSQK-YIIAPISGQKYDQFLIII-------NNLPE----SANLDNFHLFV---------A---Q-GTQYYAHKGEWKQVFNYALTDEQANAIMGALEKAAK----ELGHDELLPENRSMIAYSAIGQKAGVDMTKRNEI----AKLASQY---AP-EFEFEVAGTT-TINGFNKEFGMNHLMEELN---------VTKEEILYFGDMTQP-GGNDYPVVQGIETITVRDWKETAAIL | |||||||||||||
9 | 3f9rA | 0.14 | 0.07 | 2.57 | 0.84 | Neff-PPAS | -----------------------------------------------------------------------------------------------------------------------------------------------GMKRVLLLFDVDGTLTPPRLCQ--TDEMRALIKRARGAGFCVGTVGGSDFAKQVEQLGR----------------DVLTQFDYVFAENGLLAYRN----------GLEIHRQSLLNALGNDRIVKFVKKTLRLIADLDIPVQRGTFVEYRNGMINVSPI--GRNCSQAERDEFEVYDNEHRVRASLIAELEGLKYSIGGQISFDVFDKTYCLQFVED-------------DFEEIHFFGDK-TQEGGNDYEIYTDTIGHKVTSYKDTIAEV | |||||||||||||
10 | 4bndA | 0.16 | 0.09 | 2.88 | 1.34 | HHsearch | ------------------------------------------------------------------------------------------------------------------------------------------------KMKKILSFDIDNTLNEPKMPIFP--EMAELLATLSQK-YIIAPISGQKYDQFLIII-------NNLPE----SANDNFHLFVAQGT------------QYYAH-KAGEWKQVFNYALTDEQANAIMGALEKAA----KELGHDELLPGDNREIAYSAIGQKAGVDMTKRNEI----AKLASQY---AP-EFEFEVAGTT-TINGFNKEFGMNHLMEELN---------VTKEEILYFGDMTQP-GGNDYPVVQGIETITVRDWKETAAI- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |