Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120
| | | | | | |
| Seq | KRKADDNSYKLEDKVYQEDKKQKSRNEADLLKQAMESKYTKLLIENFLLSPYEMTDTALMAGLQAHVYPLYDELKELRGLNGVKDHLSYVSSKQEDYSKRNIAKYLKKAIEQYLPTVKRQDI |
1 | 5cwjA | 0.11 | 0.11 | 3.84 | 0.78 | SPARKS-K | | ----DSEEEQERIKEARKSEESLRQAIEDVAQLAKKSEVLEEAIRVILRIAKESGSEEALRQAIRAVAEIAKRIAKESGSEALRQAIRAVAEIAKEAQDPRVLEEAIRVIRQIAEESGSEEA |
2 | 2mtdA | 0.13 | 0.12 | 4.29 | 0.79 | FFAS-3D | | KIRLESSAQEIKDEINKIKANAKKELKAKIKAIQVAERFVKAIKEE-AEKLKKSGSSGAFSAMYDLMIDVSKPLEEI-GIQKMTGTVKEAAQKTPATTADGIIA-IAQAMEDKLNNVNKKQ- |
3 | 1ekuB1 | 0.13 | 0.09 | 3.11 | 0.27 | HHpred | | --------------EQQEGPYVKEAENLKKYFNAGHSD----VADNGTLFLGILKEESDRKIMQSQIVSFYFKLFKNFKDQSIQKSVETIKEDMN-------VKFFN--------------- |
4 | 5cwpA1 | 0.09 | 0.08 | 3.13 | 0.74 | MUSTER | | ------MSSDEEEARELIERAKEAAERAQEAAERTGDPRVRELARELKRLAQEAAEEVKRDPSSSDVNEALKLIVEAI--EAAVRALEAAERTGDPEVRELARELVRLAVEAAEEVQRNP-- |
5 | 5h7cA | 0.16 | 0.12 | 4.07 | 0.56 | CNFpred | | ---------------------------AELAKQSTDSELVNEIVKQLAEVAKEATDKELVIYIVKILAELAKQSTDSELVNEIVKQLAEVAKEA---TDKELVIYIVKILAELAKQSTDSEL |
6 | 1vt4I3 | 0.13 | 0.11 | 3.69 | 0.71 | HHsearch-2 | | -----------------EYALHRSIVDHYNIPKTFDSPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKRILNTLQQLKFYKPYICDNDP-----K-YERLVNAILDFLPKIEE |
7 | 5cwqA2 | 0.11 | 0.10 | 3.58 | 0.68 | Neff-PPAS | | ---------SEEAERASEKAQRVLEEARKVSEEAREQGDDEVLALALIAIALAVLALAEVACCRGNKEEAERAYEDARRVEEEARKVKESAEEQGDSEVKRLAEEAEQLAREARRHVQECRG |
8 | 1vt4I3 | 0.14 | 0.11 | 3.66 | 0.66 | HHsearch | | --------------EY---ALHRSIVDHYNIPKTFDSPYLDQYFYSHIG--HHLKNIEERMTLFRMVFLDFRFLEQKIILNTLQQLKFYKPYICD-----NDPK-YERLVNAILDFLPKIE- |
9 | 2pmsC | 0.11 | 0.10 | 3.54 | 0.62 | SP3 | | ---GSHMDAEEVAPQAKIAELENQVHRLEQELKEIDEAPLQSKLDAKKAKLSKLEESDKIDELDAEIAKLEDQLKAAEEEDYFKEGLEKTIAAKKAELEK-TEADLKKAVNE---------- |
10 | 2liga | 0.10 | 0.10 | 3.66 | 0.60 | PROSPECTOR2 | | MGGLLFSSLQHCQQGFVISNELRQQQSELTSTWDLMLQTRINLSRSNQQSSAKTDLLQNAKTTLAQAAAHYANFKNMTPLPAMAEASANVDEKYFAQPTQGMQNALGEALGNYARVSENLFD |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|