>PF06409 (267 residues) VINTLADHRHRGTDFGGSPWLLIITVFLRSYKFAISLCTSYLCVSFLKTIFPSQNGHDGS TDVQQRARRSNRRRQEGIKIVLEDIFTLWRQVETKVRAKICKMKVTTKVNRHDKINGKRK TAKEHLRKLSMKEREHGEKERQVSEAEENGKLDMKEIHTYMEMFQRAQALRRRAEDYYRC KITPSARKPLCNRVRMAAAEHRHSSGLPYWPYLTAETLKNRMGHQPPPPTQQHSIIDNSL SLKTPPECLLTPLPPSALPSADDNLKT |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 | | | | | | | | | | | | | | |||||||||||||
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Seq | VINTLADHRHRGTDFGGSPWLLIITVFLRSYKFAISLCTSYLCVSFLKTIFPSQNGHDGSTDVQQRARRSNRRRQEGIKIVLEDIFTLWRQVETKVRAKICKMKVTTKVNRHDKINGKRKTAKEHLRKLSMKEREHGEKERQVSEAEENGKLDMKEIHTYMEMFQRAQALRRRAEDYYRCKITPSARKPLCNRVRMAAAEHRHSSGLPYWPYLTAETLKNRMGHQPPPPTQQHSIIDNSLSLKTPPECLLTPLPPSALPSADDNLKT | |||||||||||||||||||
1 | 6em5I | 0.08 | 0.07 | 2.94 | 0.84 | SPARKS-K | ATQAAKELISTASHFNF---------------------RTDIFTLLLRRICKPRISTDPTSIQIIQTFETLLNEDEEGSISFEILRIFNKILKTSVLNMLLSLDVLHDYDKKKDRVHLSKKQRKARKEMQQIEEEMRNAEQAVSAEERERNQSEILKIVFTIYLNILKNIGSVLEGLTKFGANFDLLGDFLEVMKELISDTEFDAE-VRKALLCIVSAFSLISNTQYMKLSKFVDLPYICLDADIELSYRSLRLADPLNNEIIKPSV | |||||||||||||
2 | 2tmaA1 | 0.16 | 0.09 | 2.87 | 1.00 | FFAS-3D | -------------------------------------------------------------DAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRKQLEDELVSLQKKLKGEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAAD----ESERGMKVIESRAQKDEEK------------MEIQEIQL--------------------------------------------- | |||||||||||||
3 | 1vw1A | 0.14 | 0.12 | 4.09 | 0.41 | HHpred | ----------ATSQGGGKL----PESFMSLWRFPHMLENTQFGSTLQNIILLQNQAILTNLSIQDKTIEELDAEKTVSKAGAFDSYGKLEAMTLRASAAGLTSRVNTEADKISETYRRRRQEWEIQRNNAEAELKQI--DAQLKSLAVRREAAVLQKTSLKTQQEQTQSQ----LAFLQRK---FSNQALYNWLRLMAWELNDDARFIAWGLLAGETLMLQMEDVYAGLKDFSLGGNNNLAFGAGTQASVS---------------- | |||||||||||||
4 | 5nnvA | 0.10 | 0.08 | 3.06 | 0.80 | MUSTER | ----------------AKEEELAESSAISAKEAKIEDTRDKISVDELQQVLLVTSEELEKLEGRKEVLKERKKNAVQNQEQLEEAIVQFQQKETVLKEELSKQEFETLQAEVKQLRAQVKEKQQLSNELTELKIAAAKKEQACKGEEDNLARLKKELTETELALKEAKEDLSFLTSESSSTSGEKLEEAAKHKLNDKTKTIELIALR----RDQRIKLQHGLDTYERELKEKRLYKQKTTLL------------------------- | |||||||||||||
5 | 2j68A | 0.08 | 0.06 | 2.18 | 0.72 | CNFpred | ----------------PKFMDSLNTFLTRERAIAELRQVRTLARLACNHTRE-------AVARRIPLLEQDVNELKKRIDSVEPEFNKLTGIRDEFQKEIIN-------TRDTQARTISESFRSYVLNLGNTFENDFLRYQPELNLFDFLSSFNAALQKAQYITDKSAAWTLTAEKDINAA-----FKELSRSASQYGASY----------NQITDQITEKLT-------------------------------------------- | |||||||||||||
6 | 6gmhQ | 0.15 | 0.14 | 4.79 | 0.70 | HHsearch-2 | VEAMQAEYYYASSSFV-LPFFGQMYIYRGDKENASQCFEKVLKPEILNNVHFRLGNLGEAKKYFLASLDRAKAEAEYNAISVTTSYNLARLYEAMVDCYLRLGAMARDKGNFYEASDWFKDAWSLIGNLHLAKQEWGQKKRILKQALGNVWLQDRALAIYKGYFREARDVFAQVREAT--------ADISDVWLNLAHVEQKQ-----YIVQMYENCLRKFYKHQNTEVVLYLARALKCGKLQECKQTLLKARHVAPSTVLKSNLKE | |||||||||||||
7 | 5nnvA | 0.08 | 0.07 | 2.76 | 1.17 | Neff-PPAS | -----------------KEEELAESSAISAKEAKIEDTRDKIQALDESVDELQQVLLVTSEELEKLEGRKEVLKERKKNAVQNQEQLEEAIVQFQQKETVLKEELSKQEAVFETLQAEVKQLRAQVKEKQQLSNELTELKIAAAKKEQACKGEEDNLARLKKELTETELALKEAKEDLSFLTSTSGEEKLEEAAKHKLNDKTKTIELIALRRDQRIKLQHGLDTYERELKEKRLYKQKTTLL------------------------- | |||||||||||||
8 | 4b6xA | 0.13 | 0.03 | 1.17 | 0.54 | HHsearch | --------------------------------------------------------------------------------------------------------------------GAG---AALRQEIEDKQLMVNNLTDELQDAIDEAN--PAEIANTSQQLRHARADLADLQRRFAV----------------LRNEDRR------------------INQ------------------------------------------- | |||||||||||||
9 | 3txoA | 0.12 | 0.12 | 4.20 | 0.76 | SP3 | VM--LARVKETGDLY------AVKVLKKDVILQDDDVECTMTEKRILSLARNHPFFQTPDRDLMFHIQKSRRFDEARARFYAAEIISALMFLHDKIYRDLKLDNVLLDHEGHCKLAGMCKEGICGTPDYIAPEILQEMLYGPAVDWWAMGVL-LYEMLCEAENEDDLFEAILNDEVVYPTWLHEDATGTKNPTMRLGSLTQGGEHAILRHPFFKEIDWAQLNHRQIEPPFRPRIKSREDVSFDPDFIKEEPVLPIDEGHLPMINQDE | |||||||||||||
10 | 5nnvA | 0.08 | 0.07 | 2.66 | 1.00 | PROSPECTOR2 | AKEEELAES-----------SAISAKEAKIEDTRDKIQALDESVDELQQVLLVTSEELEKLEGRKEVLKERKKNAVQNQEQLEEAIVQFQQKETVLKEELSKQE-----AVFETLQAEVKQLRAQVKEKQQLSNELTELKIAAAKKEQACKGEEDNLARLKKELTETELALKEAKEDLSFLTSESSSTSGEEKLEEAAKHKLNDKTKTIELIALRRHGLDTYERELKEKRLYK----------------------------QKTTLL | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |