Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80
| | | | |
| Seq | DPVTQLSQLFQQGSPLCIIFNAVKPQHKLPVVSSDDLKICKKSIYDFILACKQHFSFTDEELFTISDVFSNSTNNFIKVLDVVTTLL |
1 | 2l3gA | 0.26 | 0.24 | 7.46 | 2.01 | SPARKS-K | | DPEGFLQASLKDGVVLCRLLERLLPGTIEKVYPERSESECLSNIREFLRGCGASLRLET---FDANDLYQG--QNFNKVLSSLVTLN |
2 | 2d86A | 0.27 | 0.26 | 8.10 | 1.64 | FFAS-3D | | AQVFDLAQTLRDGVLLCQLLNNLRAHSINNLRPQMSQFLCLKNIRTFLTACCETFGMRKSELFEAFDLFDV--RDFGKVIETLSRL- |
3 | 3ky9B | 0.28 | 0.28 | 8.43 | 1.99 | HHpred | | AQVCELAQALRDGVLLCQLLNNLLPHAINLVNLQMSQFLCLKNIRTFLSTCCEKFGLKRSELFEAFDLFDV--QDFGKVIYTLSALS |
4 | 2l3gA | 0.26 | 0.24 | 7.46 | 1.87 | MUSTER | | DPEGFLQASLKDGVVLCRLLERLLPGTIEKVYPERSESECLSNIREFLRGCGASLRLE---TFDANDLYQG--QNFNKVLSSLVTLN |
5 | 3ky9A | 0.27 | 0.26 | 8.10 | 0.97 | CNFpred | | AQVCELAQALRDGVLLCQLLNNLLPHAINLRE-QMSQFLCLKNIRTFLSTCCEKFGLKRSELFEAFDLFDV--QDFGKVIYTLSALS |
6 | 3ky9B | 0.28 | 0.28 | 8.43 | 1.42 | HHsearch-2 | | AQVCELAQALRDGVLLCQLLNNLLPHAINEVNLQMSQFLCLKNIRTFLSTCCEKFGLKRSELFEAFDLFDV--QDFGKVIYTLSALS |
7 | 2l3gA | 0.26 | 0.24 | 7.46 | 1.80 | Neff-PPAS | | DPEGFLQASLKDGVVLCRLLERLLPGTIEKVYPERSESECLSNIREFLRGCGASLRLE---TFDANDLYQG--QNFNKVLSSLVTLN |
8 | 1p2xA | 0.16 | 0.15 | 4.99 | 2.31 | HHsearch | | GPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYNELQFRHSDNINKFLDFIH-GIGLPEIFHFELTDIYEG--KNLPKVIYCIHAL- |
9 | 2d86A | 0.27 | 0.26 | 8.11 | 0.96 | PROSPECTOR2 | | GQVFDLAQTLRDGVLLCQLLNNLRAHSINNLRPQMSQFLCLKNIRTFLTACCETFGMRKSELFEAFDLFDV--RDFGKVIETLSRLS |
10 | 1p2xA | 0.16 | 0.15 | 4.98 | 1.15 | SAM | | -PTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYNELQFRHSDNINKFLDFIH-GIGLPEIFHFELTDIYEG--KNLPKVIYCIHAL- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|