>PF06277 (475 residues) EELLSVGIDIGTSTTQLIFSKLIVENEASAFTVPRISIVDKEIIYRSEVYFTPLISNTEI DGRKIKEIIEEEYKKAGINKDDIQTGAVIITGETARKENANDVLHTLSGFAGDFVVATAG PDLESIIAGKGAGAHIYSKEHSTSVVNIDIGGGTSNLALFLRGEVKDTGCLDVGGRLIKI NPNTREIIYISPKIEKIIKEKNLGLEIGTKATVENIKPVVNMMVAWLEESVGLRPKDEYF DYIVTNKSIALENEIKCISFSGGVADYIYYEGEIQDYFKYGDIGIILGQAIKNSDLCKKL KVVKSIETIRATVVGAGSHTTEISGSTITYTKDSFPIKNLPILKLSLEDESQGAYELETA LKKKIEWFRLENDFQKIAIAINGKKNPSFKEIQEYAKGLVNGMKDLIEKEGQLIVVVEND MAKVLGQAIYSLLNFQKEIICIDGIKVENGDYIDLGTPIADGKVLPVVIKTLVFN |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 | | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | EELLSVGIDIGTSTTQLIFSKLIVENEASAFTVPRISIVDKEIIYRSEVYFTPLISNTEIDGRKIKEIIEEEYKKAGINKDDIQTGAVIITGETARKENANDVLHTLSGFAGDFVVATAGPDLESIIAGKGAGAHIYSKEHSTSVVNIDIGGGTSNLALFLRGEVKDTGCLDVGGRLIKINPNTREIIYISPKIEKIIKEKNLGLEIGTKATVENIKPVVNMMVAWLEESVGLRPKDEYFDYIVTNKSIALENEIKCISFSGGVADYIYYEGEIQDYFKYGDIGIILGQAIKNSDLCKKLKVVKSIETIRATVVGAGSHTTEISGSTITYTKDSFPIKNLPILKLSLEDESQGAYELETALKKKIEWFRLENDFQKIAIAINGKKNPSFKEIQEYAKGLVNGMKDLIEKEGQLIVVVENDMAKVLGQAIYSLLNFQKEIICIDGIKVENGDYIDLGTPIADGKVLPVVIKTLVFN | |||||||||||||||||||
1 | 5obuA | 0.18 | 0.16 | 5.34 | 1.04 | SPARKS-K | -NGLIIGIDLGTTNSCVSVMEVVLENPEGKRTTPSIVSYKNEIIVTNPNTIVSIGTTKELSEQVSAQILSYLKDFAEKKIGKKISRAVITVPAYFN-DAERNATKTAGKIAG---LNVERIINEPTAAALAYGI--DKASREMKVLVYDLGGGTFDVSLLDIAEVLATADNRLGG--------DDWDNKIIEYISAYIAKEGLNLSKDKMAMKEAAERAKIELFEELTKPLLERTRNPISDVIKEAK-IKP-EEINEILLVGGSTRM-----------------PAVQKLVESMV--PGKKPNRSINPDEVVAIGAAIQGGVLRGDVKDVLLDVTPLGGTPLIKRNTTIPVSKSQIFSTA----------QDNQESVDVVVCQGERPMSRDNKSLGRFNLGGIQPAPKGKPQIEITFSLDANGILNVKAKDLTTQKENSITISSEEEIQKMIRDAEANKERDNIIRERIELRNEG | |||||||||||||
2 | 4czeA | 0.20 | 0.12 | 3.70 | 1.35 | FFAS-3D | -----IAIDLGTANTLIYQKKGIVLNEPSVV---ALRNVGGRKVVHAVGAIRPMRDGVIADFEVAEEMIKYFIRKVHNRKGFVNPKVIV-CVPSGATAVERRAINDSCLNAGARRVGLID---EPMAAAIGAGL---PIHEPTGSMVVDIGGGTTEVAVLSLSGIVYSRSVRVGGDIISYMRRHHNLLIGETTAERIKKEIGTARAPEGLSIADALAEPVGQIVEAVKVALEATPPELASDIAD-----------KGIMLTGGGALL-------------RGLDAEIRDHT-------GLPVTVADDPLSCVALGCGKVL----------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
3 | 5obuA | 0.20 | 0.17 | 5.38 | 2.18 | HHpred | -NGLIIGIDLGTTNSCVSVMEGGLENPEGKRTTPSIVSYKNEIIVTNPNTIVSLMTTKELSPEQVSAQILSYLDFAEKKIGKKISRAVI-T-VPAYNDAERNATKTAGKIAGLNVERI---INEPTAAALAYGIDKA--SREMKVLVYDLGGGTFDVSLLDIAELATAGDNRLGGD--DWDNK--IIEYISAYIAKEAERAKIELSAQLKLTRAKFEELTKPLLERTRNP--------ISDVIKEAK-IKP-EEINEILLVGGST-RMPAVQ--------------------KLVSMVGKKPNRSINPDEVVAIGAAIQGGVLRGDVKDVLLDVTPL-TLSIETLGGVATPLKNTTIPVS---KSQIFSTADNQESVDVVVCQGERPMSRDNKSLGRFNLGGIQPAPKGKPQIEITFSLDANGILNVKAKDLTTQKENSITIS-------------------------------- | |||||||||||||
4 | 1u2vA | 0.17 | 0.13 | 4.34 | 0.79 | MUSTER | GRLPACVVDCGTGYTKLGYAG----NTEPQFIIPSCIAIDLDFFIEKPTYATPIRHGIVEDWDLMERFMEQVIFKYRAEPEDHY--FLLTEPPLNTPENREYTAEIMFESFNVPGLYIA---VQAVLALAASWTSRQVGERTLTGTVIDSGDGVTHVIPVAEGYVICIKHIPIAGR------------DITYFIQQLLRDREVGIPP--EQSLETAKAVKERYLVKEFNKYDTDGSKWIKQY--TGINAISKKEF-SIDVG--GPEIFFHPEFANPDFTQP-ISEVVDEVIQNCPIDVRRPLYK---------------NIVLSGST-----------MFRDF----------GRRLQRDLKRTVDARLKLSEELK-----------------------------PKPIDVQVITHHMQRYAVWFGGSMLASTPEFYQVHT---------DY---GPSICRHNP--------VFG | |||||||||||||
5 | 5obuA | 0.19 | 0.15 | 4.97 | 1.32 | CNFpred | --GLIIGIDLGTTNSCVSVMEVVLENPEGKRTTPSIVSYKEIIVGDA-NTIVSIK-TKELSPEQVSAQILSYLKDFAEKKIGKKISRAVITVPAYFNDAERNATKTAGKIAGLNVERII---NEPTAAALAYGIDKAS--REMKVLVYDLGGGTFDVSLLDIFEVLATAGDRLGGDDWDNKI-KMAMQRLKEAAERAKIEL-GPVNVELKLTRAKFEELTKPLLERTRNPIS--------DVIKEAK--IKPEEINEILLVGGSTR-----------------MPAVQKLVESMVP--GKKPNRSINPDEVVAIGAAIQGGVLRGDVKDVLLDVTPL-TLSIETL----------------------------GGVATPLIKRNTTIPVSKSQIFSTAQ---------QESVDVVVCQGERPMSRDN-------KSLGRFNLGGIQPAPKPQIEITFSLDANGILNVKAKDLTTQ | |||||||||||||
6 | 4czeA | 0.18 | 0.11 | 3.43 | 0.89 | HHsearch-2 | --SNDIAIDLGTANTLIYQKGKGIVLNEP--SVVALRNVGVVHAVRTPEAIRPMRDGVIADFEVAEEMIKYFIRKVHNRKGFVNPK-VIVCVPSGATAVERRAINDSCLNAGARRVGL---IDEPMAAAIGAGLP---IHEPTGSMVVDIGGGTTEVAVLSLSGIVYSRSVRVGGDKM--DEA--IISYMRRHHNTTAERIGTARAPGVRISEKQAADALAEPVGQIVEA--------VKVALEATPPLASDIADKGIMLTGGGA-LLRGLD--------------------AEIDHTGLPVTVADDPLSCVALGCGKVLE---------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
7 | 2v7yA | 0.16 | 0.13 | 4.32 | 1.13 | Neff-PPAS | ---KIIGIDLGTTNSCVAVLEKVIPNPEGNRTTPSVVAFKNGERLVGEVAKRQAITGKQYTPQEISAIILQYLKSYAEDYLGEPVTRAVITVPAYFNDAQRQATKDAGRIAGLEVERIIN---EPTAAALAYG---LDKEEDQTILVYDLGGGTFDVSILELGVKATAGDNHLGGDDFDQVKDKMALQRLKDAAEKAKKELSGVISANENGPLHLEMTLTRAKFEELSAHLVERTMGPVRQALQDAGL--TPADIDKVILVGGSTRI-----------------PAVQEAIKRELG---KEPHKGVNPDEVVAIGAAIQGGVIAGTKLIERNTTIPTSKSQVFTTAAD------------------------NQTTVDIHVLQGERPMAADNKSLGRFQLTGIPPAPRGVPQIEVTFDID----------------------------------------ANGIVHVRAKDLGTN | |||||||||||||
8 | 4czeA | 0.18 | 0.11 | 3.48 | 1.40 | HHsearch | --SNDIAIDLGTANTLIYQKGKGIVLNEP--SVVALRNVGVVHAVRTPEAIRPMRDGVIADFEVAEEMIKYFIRKVHNRKGF-VNPKVIVCVPSGATAVERRAINDSCLNAGARRVGL---IDEPMAAAIGAGLP---IHEPTGSMVVDIGGGTTEVAVLSLSGIVYSRSVRVGGDKM--DEA--IISYMRRHHNTTAERIGTARAPGVRISEKQAADALAEPVGQIVEA--------VKVALEATPP-ELASDIKGIMLTGGGA-LLRGLD--------------------AEIDHTGLPVTVADDPLSCVALGCGKVLE---------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
9 | 2v7yA | 0.16 | 0.13 | 4.41 | 1.22 | PROSPECTOR2 | MSK-IIGIDLGTTNSCVAVLEGGIPNPEGNRTTPSVVAFKNGERLTNPNTIISIIEGKQYTPQEISAIILQYLKSYAEDYLGEPVTRAVITVPAYFNDAQRQATKDAGRIAGLEVERII---NEPTAAALAYGLDK---EEDQTILVYDLGGGTFDVSILEDGVFATAGDNHLGGDDFDLSKDKMALQRLKDAAEKAKKELSGVISANENGPLHLEMTLTRAKFEELSAHLVERTMGPVRQALQDAGL--TPADIDKVILVGGSTRI-----------------PAVQEAIKREL---GKEPHKGVNPDEVVAIGAAIQGGVIAGEVIETMGGVIPTSKSQVFTTA------------------------ADNQTTVDIHVLQGERPMAADNKSLGRFQLTGIPPAPRGVPQIEVTFDID---------------ANGIVHVR--------AKDLG----TNKEQSITIKEAAEL | |||||||||||||
10 | 4j8fA | 0.18 | 0.11 | 3.44 | 1.84 | SAM | ---AAIGIDLGTTYSCVGVFQHGIANDQGNRTTPSYVAFAKRLIGRKFG---PF--TKAFYPEEISSMVLTKMKIAEAYLGYPVTNAVIT--VPAYFNDSQQATKDAGVIAGLNVLRI---INEPTAAAIAYGLD-RTGKGERNVLIFDLGGGTFDVSILTIDDKATAGDTHLGGE--DFDNR--LVNHFVEEFKRACERAKRTLSSSTFEGIDFYTSITRARFEELCSDLFRSTLEPVEKALRDAK-LDKA-QIHDLVLVGGST-RIPKVQ--------------------KLLDFFGRDLNKSINPDEAVAYGAAVQAAILMG------------------------------------------------------------------------------------------------------------------------------------------------------ | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |