>PF06255 (317 residues) DDMQAKHYEPGGKYHLFGNXRGSVKNRVCAVQTFDATAVGPILPITHERTGFEGIIGYET HFSGHGHEVHSPFDNHDSKSTSDFSGGVDGGFTVYQLHRTGSEIHPADGYDGPQGGGYPE PQGARDIYSYHIKGTSTKTKINTVPQAPFSDRWLKENAGAASGFLSRADEAGKLIWENDP DKNWRANRMDDIRGIIQGAANPFLTGFQGLGVGAITDSAVNPVTYAAAQQTLQGIHDLGN LSPEAQLAAASLLQDSAFAVKDGINSARQWADAHPNITATAQTALAVAEAAGTVWGGKKV ELNPTKWDWVKNTGYEK |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 | | | | | | | | | | | | | | | | |||||||||||||
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Seq | DDMQAKHYEPGGKYHLFGNXRGSVKNRVCAVQTFDATAVGPILPITHERTGFEGIIGYETHFSGHGHEVHSPFDNHDSKSTSDFSGGVDGGFTVYQLHRTGSEIHPADGYDGPQGGGYPEPQGARDIYSYHIKGTSTKTKINTVPQAPFSDRWLKENAGAASGFLSRADEAGKLIWENDPDKNWRANRMDDIRGIIQGAANPFLTGFQGLGVGAITDSAVNPVTYAAAQQTLQGIHDLGNLSPEAQLAAASLLQDSAFAVKDGINSARQWADAHPNITATAQTALAVAEAAGTVWGGKKVELNPTKWDWVKNTGYEK | |||||||||||||||||||
1 | 5cqcA | 0.06 | 0.05 | 2.24 | 0.83 | SPARKS-K | -----SIYPPETSWEV--NKGMNSSRAFYLGDDVSVLLTGAYGFQSKKND-----QQIFLFRPDSD--YVAGYHVDAKSDSEFCSKATQPATFILPFVEMPT-------DITKGVQHQDPKSKQLTPTVYDSI------GRDTYSESLSSYFKGKYRTTDEILTQSIEKAIKLGKFTRAAYNTEGNIKEVISSSAQGVQDIESIKYRNLGVSALTEGKTLPVQLSEFIVALEDYGKLRQYSKTAKLTAVELLIGILNDIKGKESQYDKLVKEVDCLMD--SSLGKLVQFHLKNLGAESLQKLPCVKFD--------- | |||||||||||||
2 | 2tmaA1 | 0.07 | 0.03 | 1.32 | 0.72 | FFAS-3D | -------------------------------------------------------------------------------------------------------------------------------------------------MDAIKKKMKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELD--RAQERLATALQLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHI----------------------- | |||||||||||||
3 | 5o9zH | 0.11 | 0.06 | 2.04 | 0.30 | HHpred | ---------------------------------------------------------------------------------------------------------------------------------------MGPVEAAPEYRVIVANNLTVEIENELNIIHKFIRDKYSK---RFPELESLPNALDYIRTV-KELGNSLDKCNENL--QQILTNA------TIMVVSVTASTTQGQQLSEEELERLEEACDMALELNASKHRIYEYVESAPNLSIIIGASTAAKIMGVAGGLTNSSTSVLPHT---------- | |||||||||||||
4 | 5b4sA | 0.20 | 0.17 | 5.56 | 0.56 | MUSTER | ----AAGVIPVGDSRVYGAVFD--KGRKLTVNQWQA-----VLSDAYPE---NGTTNY----QEVGPWRYCEVDYEAAQGISDYRGDT---FGPVGVTTVGD--FPDKAF-APYVLGKSNATNADLAWGVQVTGVTAG-NFQADDTAPSKSRSDKNKRAALTKICGALQSAFD---------TQQDKYVSHYAHIDQDKLVPVLNALKGIGFTAFDRYNLGSIGSISAFSSVKSAGNCGSLSAETCFATYLTDQYIRWLKPDNCWRALDIYKKDP--TGSVSVVNQVINASYPGNSGK-CPTSGIKWS--KNS-WQ- | |||||||||||||
5 | 2pffA1 | 0.17 | 0.14 | 4.48 | 0.60 | HHsearch-2 | GGGG--GVTFKDKYVLITGGKGSIGAE-------------------VLQGLLQGGAKVVVRFSKQTDYYQSIYAKYGA------KGSTLIVVPFNQGSKQDVEALIEFIYDTEKNGGLGWDLDAIIPFAAI---PEQGIELEHIDSKSFAHRIMLTNGCVKKQKSARGIETRQVILPMSPNHGTFGGDLTVCGAIIGSANNIIAEGIEKMGV--RTFSQKEMAFNLLGLLTPEVVE-LCQKS--PVMADLNGGLQFVPELKEFTAKLRKELVETS---EVRKAVSETALEH------KVVNGN-------------- | |||||||||||||
6 | 1maeH | 0.10 | 0.10 | 3.60 | 0.74 | Neff-PPAS | GPTNDEAPGADGRRSYINLPAHHSAI--IQQWVLDAGSGSILGH-------VNGGFLPNPVAAHSGSEFALASTSFSRIAKGKRTDYV----EVFDPV-TFLPIADIELPDAPRFDVGPYSWMNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSPTCYHIHPTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVHIYDAGAGDQDQS | |||||||||||||
7 | 4ebaG | 0.19 | 0.05 | 1.53 | 0.30 | HHsearch | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PWLP---------VGV----DVNINMTTPAMCISSE---LGKLQKDQQMALLKVIQHFCKD-----ETFVALLEEAPQLSYAIELLL-SN------GVCSVDQLTQLA----------- | |||||||||||||
8 | 2qyuA | 0.08 | 0.08 | 3.06 | 0.51 | SP3 | RNITFSKILPPSFMERDGDIIKGFNFSNSKFTYSDISHLH-FDECRFTYSTLSDVVCSNTKFSN------SDMNEVFLQYSITTQQQPS--FIDTTL--KNTLIRHKANLSGNEPDNSSPPSVSGGGNFIRLGD--IWLQMPLLWTENAVDGFLNHEHNNGKSILMTIDSL---------PDKYSQEKVQAMEDLVKSLRGGRLTEACIRPVESSLVSVLAHPPYTQSALISEWLGPVQEFAHQCQTYNDVPLPAPTYYQQRILPVLLDSFDRNSAAMTTHSGLFNQVILHCMTGVDCTDGTRQKAAALYEHPAVSP | |||||||||||||
9 | 4dtdA | 0.10 | 0.09 | 3.40 | 1.16 | PROSPECTOR2 | TKA-----TPDFPTHFLAGLVVAPANSAQKFGYVKSAQGDALFLTKDNQGSYQRPPSLQDGKNYQNWQTHTPCEDDSNHQPLAPIQSEDGRFVIEITNAKHVIAAGNGISAESQGQTITTPSGQQATVGVAAK--------GFGTSATPELRLLESAPWYQKSLKSQFASLTSAENLDDKELAANVFALTSIYLKTAELAKKFGIYINEWDPSEQITPNANGLTDPKVKNAWEI---LPRTKPSKIVEILS-----KSDAKAVKHIKPQLQSRYSESLSKNVFQYFQDGGEVAGHGINNATVGDKHSNELQSYLPKT | |||||||||||||
10 | 4mf5A2 | 0.17 | 0.06 | 1.87 | 0.39 | FFAS03 | ------------------------QDAAGRYEAIQ-WVMFQMGGI----GPMFGQLGFFHKFAGKEYEDKRPRDRYVAESKR---------LGVLEQRLEGREWILGDQYSIADIATFP----VRNLIGFYEAGELVAIQDFPNVQRALA----------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |