>PF06089 (336 residues) VVTYRGNVVENRHQVHAAVTDATGRIIYAVGNPTRVTLARSAAKPAQALAVLETGALKKF DFDEADLALMCASHSSEDRHLARARAMLAKAGLQEENLRCGGHAALSESVNRAWIKRDWT PTAIANNCSGKHAGMLAGAKALGAPPAEYHCINHPLQQQVTHAVEELAGLPSDRVQWAID GCNLPAPALPLQNLASIYARIANAANAAPTDHPSPRAQALARIFRAMAGHPELVGGDGRF CTELMQAFEGVLIGKVGADGCYAIGVRASGYTQQLGISGALGIAVKIEDGNGEVLYAAVV EILRQLQIGTPAQLQSLEAFHQPEIRNTAGVVTGHT |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | VVTYRGNVVENRHQVHAAVTDATGRIIYAVGNPTRVTLARSAAKPAQALAVLETGALKKFDFDEADLALMCASHSSEDRHLARARAMLAKAGLQEENLRCGGHAALSESVNRAWIKRDWTPTAIANNCSGKHAGMLAGAKALGAPPAEYHCINHPLQQQVTHAVEELAGLPSDRVQWAIDGCNLPAPALPLQNLASIYARIANAANAAPTDHPSPRAQALARIFRAMAGHPELVGGDGRFCTELMQAFEGVLIGKVGADGCYAIGVRASGYTQQLGISGALGIAVKIEDGNGEVLYAAVVEILRQLQIGTPAQLQSLEAFHQPEIRNTAGVVTGHT | |||||||||||||||||||
1 | 2pbyA | 0.17 | 0.12 | 3.83 | 0.90 | SPARKS-K | ADYIPALGKANPNELSIAIYTPDDE-VVSAGDVTVKVTLQSISKIIALALVLIDRVFHKVGMEPNAGALVVTSMGSVSERLERLLAFVRRLAIS-----------YSDEVARSEFETA-------------NRSLCYFLKQHR-------IIDEDV-EELMELYTKQCA-------IEMT----------CIDLARIGLVLALDGRDPHSSEPLMPLDVARICKTFMVTCG-MVG----------------IPAKSGVSGGILAAVPGR-----------CGIGVFGLDGNSLTGVKLLERLSKTYSLSIF------------------------- | |||||||||||||
2 | 2pbyA | 0.18 | 0.12 | 3.99 | 0.86 | FFAS-3D | ---------------SIAIYTPDDEV-VSAGDVTVKVTLQSISKIIAALVLIDRGVFHKVGMEPNAGALVVTSGGSVSERLERLLAFVRR-------LAGNERISYSDEVARSEFET-----------AFLNRSLCYFLKQHR-------IIDEDVEELMELYTKQ---------------CAI---EMTCIDLARIGLVLALDGRDPHSSEPLMPLDVARICKTFMVT-----CGMYNSSGEFAIKVG--IPAKSGVSGGILAAVPGR-----------CGIGVFGLDGNSLTGVKLLERLSKTYSLSI-------------------------- | |||||||||||||
3 | 3ihbA | 0.19 | 0.14 | 4.60 | 0.45 | HHpred | --------ADPD-RFGIALATPTGRL-HCAGDADVEFTIQSASKPFTYAAALVDR--------------------GF-------AAVDRQVGLNPSG------EAFNEL---SLEASHRPDNAMIN------AGALAVHQLLVGPEA------SRKEDRAVEIMSLLAGRRL-----SVDQCAV---LVTVKDLAVMGACLATGGIHPMTGERMLPSIVARRVVSVMTS-----SGMYDAAGQWLADVG--IPAKSGVAGGVLGALPG-----------RVGIGVFLDVGNSARGVLACRRLSEDFRLHLMDGDSLGGTAV-RFVEREGDRVFL-- | |||||||||||||
4 | 2qpnB | 0.14 | 0.10 | 3.54 | 0.77 | MUSTER | LEEREKAA-----QIGVAIVDPQGEIVAGH-RMAQRFAMCSTFKFPLAALVFERIDSGTERGDRK---LSY-----GPDMIVPATERFLASGMTVLEAAQAAVQLSDNGATNLLLRE------------GGPAAMTQYFRKIGDSVSRLDRKE-----------PEMGDNTPGDLRDTT----------TPIAMARTVAKVLYGGALT--------STSTHTIERWLIGNQT---GDATLRAGF--PKDWVVGEKTGANGGRNDIG--------KAQERDYAVAVYTTKLSAVERDELVASVGQVI----TQLILS-------------------- | |||||||||||||
5 | 5jyoA | 0.11 | 0.08 | 2.78 | 0.97 | CNFpred | ---------------GVSVCTVD-GQRHSTGDTKVPFCLQSCVKPLKYAIAVNDLGTEYVH-MVNAGAIVVTSL-NNAEKFDYVMQFLNKMA--------NEYVGFSNATFQSERES-----------GDRNFAIGYYLKEK-----KCFPEGTDMVGILDFYFQLC------------------SIEVTCESASVMAATLANGGFCPITGERVLSPEAVRNTLSLMHSCGMY-----DFSGQFAFHV--GLPAKSGVAGGILLVVPN---------VMGMMCWSPPLDGNSVKGIHFCHDLVSLCNFH--------------------------- | |||||||||||||
6 | 6nhuA | 0.16 | 0.10 | 3.37 | 0.56 | HHsearch-2 | -----------QAFECTLVTSITGAIINQQGACDQRVAPASTFKVPLALIGFDAGILQ---DGKT-P--AWDWKPGSDRKTVDPTIWEQD---------------SVLWYSREITRR------L-----G-PEKFAAYVKRLGYGNADVSGEPNGLTH-------SW---------------LGASLTISPVEQVGFLRRLLGGNLP----FSR---DAQAKTRAIMPVFD--------------APESWAVHGKTGTGYMFVGWAERE--------GQHIVFARLRVSDKPPAVRDAFLRDIPRLAV---------------------------- | |||||||||||||
7 | 1bsgA | 0.12 | 0.08 | 2.95 | 0.75 | Neff-PPAS | -----------ARLGVYAYDTGSGRTVAYRAD--ELFPMCSVFKTLSSAAVLRDLDRNGEFLS-------------------------RRILYTQDDVEQADGAPETGK--PQNLANGMTVEELCEVSITANCAANLMLRELGG------------PAAVTRFVRSLGRLDRWEPELNSAEPGRVTDTTSPRAITRTYGRLVLGDALN--------PRDRRLLTSWLLA-----NTTSGDRFRAGLPDDWTLGDKTGAGNNDAGVTWPPG-------RAPIVLTVLTAKRDDGLVADAARVLAETLG----------------------------- | |||||||||||||
8 | 1u60A | 0.20 | 0.15 | 4.74 | 0.82 | HHsearch | HSLNGGQNVPGQLA-AVAIVTCDGNV-YSAGDSDYRFALESISKVCTLALALEDV--------------------G-------PQAVQDKIGADP------TGLPFNSVIALEL-HGGKPLSPLVN------AGAIATTSLINAE------NVEQRWQRILHIQQQLAGEQVAACDVYTRQCST---LLNTIELATLGATLAAGGVNPLTHKRVLQADNVPYILAEMMM-----EGLYGRSGDWAYRV-G-LPGKSGVGGGILAVVPG-----------VMGIAAFLDDGNSVRGQKMVASVAKQLGYNV---------------FKG-------- | |||||||||||||
9 | 4mx4A | 0.13 | 0.09 | 3.09 | 0.85 | SP3 | EAHN--QA-----KIGVALVSENGNLIQGY-RANERFAMCSTFKLPLAALVLSRIDAGEENPE-------------------------RKLHYDSAFLE------EYAPAAKRYVATGYQLSD--------NAAANLLLKEVGG------------PPLLTKYFRSLRIEPTLNTNTP----GDERDTTTPMSMAQTVSKLIFGDTLT--------YKSKGQLRRLLIGNQT---GDKT----IRAGLPDVTGDKTGANGGRNDVA-----FFITTAGKKYVLSVYTNELQGEERALLIASVAKLAQYVVH------------------------- | |||||||||||||
10 | 3dc8A | 0.12 | 0.12 | 4.18 | 0.89 | PROSPECTOR2 | STVIKGGTIDLTYKADVKVLDATGCYVMPFMGTYSSDDFESGTRAALALEALTM-WDNKSTRANCDYSFHMAITWWGEQVFNEMETIVKDKGINTFHFMAYKGALVDDDEMFSSFAALGALPLVHAENGDVVAQLQAKLLAEGNSGPEAHAYSRPAEVEGEAANRAIMIADMAGCPVYIVHTSCEQLTLDETEYFDKDWDHAARRVMSPPFRNKLHQDSLWAGLASFTRIPNGTGGLEDRMPMLWTYGVATVVWDPKRSKTISAKTQQSAIDYNVFEGKTVTGLPRIEEGRDPFPAVS------------TALSTWKEVTAPRAVQRSGIPASGVH | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |