>PF06012 (369 residues) GDRELLEAILDFSRLLLEKCGNRSLYSSSERLGELLNTTSLSLLQSTLRLSLCLAQRYHS RQRGGSHIQHSLLAAHYNIDLEKLQKVAAPFPRPSVPGRTAVSPVASIKSKEKASQARHN ANDMSVLVRENESWDEWGSVRLLYYPSGSSEPVKTAPETGTSGPSVQAPTTPTPLRRSHT HPTPRLSRMSTAEDSPASVTSTPGKQDETLRGGKTLEIPYSKISSTSAEELVAAHVDEVP DDSKYELLHRIRTAQGLATSDSTREQILAIRILALTNLAYVYPEPLFQQKVLQYDMEQPK RLQLAYQLAELVHLGASGDLPVSRTLQTLALQALDALAKHKARAIDVCGALSVNVNHGVL MFLTRKTVN |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | GDRELLEAILDFSRLLLEKCGNRSLYSSSERLGELLNTTSLSLLQSTLRLSLCLAQRYHSRQRGGSHIQHSLLAAHYNIDLEKLQKVAAPFPRPSVPGRTAVSPVASIKSKEKASQARHNANDMSVLVRENESWDEWGSVRLLYYPSGSSEPVKTAPETGTSGPSVQAPTTPTPLRRSHTHPTPRLSRMSTAEDSPASVTSTPGKQDETLRGGKTLEIPYSKISSTSAEELVAAHVDEVPDDSKYELLHRIRTAQGLATSDSTREQILAIRILALTNLAYVYPEPLFQQKVLQYDMEQPKRLQLAYQLAELVHLGASGDLPVSRTLQTLALQALDALAKHKARAIDVCGALSVNVNHGVLMFLTRKTVN | |||||||||||||||||||
1 | 4r0zA | 0.11 | 0.08 | 2.72 | 1.04 | CNFpred | TNPKLLAQVADGLYFLLIDDSKITFLLGPQILVSILREYHRKLIYTVVRCIRSLSVC--------PSNKPALISLG---CLPALYVELCTAKDE--------------------RSQTAILVAMRNLSDSATNEENLTQLIIKLL--------------------------------------------------------------------EIIRVANDGMT-ACACGTLSNLTC--NTRNKQTVCGIDALVTAIRRLP-EVEEVTEPALCALRHCTARHLAEEAQSELR--------FCQAFPVILDQLETL-------RTPVIKAALGVIRNSALLQTNLIELTQEQ--HTAVSLTMDILRRAIT | |||||||||||||
2 | 6mzeE | 0.08 | 0.08 | 3.07 | 1.02 | Neff-PPAS | -VWKARLNAYQELNNLFTKSSVANYWLDPELFASYIVDSNVVAQENAIIALHTLLEYISQVPVSTSKLRLQWIPPLVEKATDCIMLLTQSDTSIQQATIIEEFGFINVSDINILLSEILEPLPKLSSHADRNVRSETMNLILQIYKWFGKELEKLKPIQQRDLSRMFEKYEGTIPPKQQPRLFQWAVPAQNAVDPFELLPPSVILDKFPADFQTRISSTKWKDRVEALEEIHNNVLKPAHKNQDYSDYLRVLANVIQKDA---NVQAVTIAANSVQLLCNSLR----------SNFTRSYGAIVLVPLLERTKEKK-------PSVNEAICSALDAVATYDDCLEETLNYMKTPQVRIECTKFLTRMLQ | |||||||||||||
3 | 1gw5b | 0.09 | 0.09 | 3.38 | 1.00 | PROSPECTOR2 | SKEKRKEAVKKVIAAMTVGKDVSSL---FPDVVNCMQTDNLELKKLVYLYLMNYAKSGCIRVDKITEYLCEPLRKCLKDEDPYVAKLHDINAQMVEDSESHPNSNLLDLNPQNINKLLTALNELDCLSNYNPKDDREAQSICERVTPRLSHAKFLELLPKDSDYYNMLLKKLAPPLVTLLSGEPEVVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRIGRCAIKVEQSAERCVSLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYE--SIIATLCENLDSLDE------PDARAAMIWIVGEYAERIDNADELLESFLEGFHDETLLTAIVKLFL | |||||||||||||
4 | 6mzeE | 0.08 | 0.07 | 2.84 | 0.99 | SPARKS-K | SNVVAQENAIIALHTLLEYISQVPNVSTSKLRLQWIPPSRAATKAKATDCIMLLTQSD----TSIQQTVNLMLPRLVSSCVKCLATIIEEFGFINVSDINILLSEISHADRNVRSETMNLILQIYKWFGKELLQELLL---------EKLKPISRMFEKYEGTIPPKQQPRLFQWAVPAQNAVDPFELLPPSVILDKFPADSSTKWKDRVEALEEIKLAHKNQDYSDYLRVLANVIQKDNVQAVTIAANSVQLLCNSLRTRSYGAIVLVPLLERTKEPSVNEAICSALDAVATYCGFDD----CLEETLNYMKHKT-------PQVRIECTKFLTRMLQLPEVTTAVLKIVNDNTGFECFATLMKLVGE | |||||||||||||
5 | 3txmA | 0.11 | 0.09 | 3.16 | 0.93 | FFAS-3D | NDEERIQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLARLIALY--------------FDTALYTEALAL---GAQLLRELKKLDDKNLLVEVQLKTYHALSNLPKARA-----------------------------------ALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYESVDSVKALTSLKYMLLCKIMLGQSDDVNQLVSGAMKSVAEASHKRSLADFQAALKEYKKELAEDVIVQAHLGTLYD-----------TMLEQNLCRII-EPYSRVQVAHVAESIQLPMPQ--VEKKLSQMI- | |||||||||||||
6 | 5xjgA | 0.14 | 0.10 | 3.41 | 0.38 | HHpred | NEREAVTLLLG----Y-----QLDFYGPLKALTTLVYSDNLNLQRSAALAFAEITEKYVRQVS------RE--------VLEPILILLQ---SQDP-QIQVALGAVNNENKLLIVE-MGGLEPLINQMMG-----------------DNVEV-----------------------QCNAVGC---ITNLATRDD---------NKHKIATSGA----LIPTKLAKSKHIRVQRNATLNMTEENRKELVNAPVLVSLLSST-D-----PDVQYYCTTALSNIAVDEANRKKLAQTEP------RLVSKLVSLMDSP---S----SRVKCQATLALRNLASDTSYQLEIVR-------AGGLPHLVKLIQS | |||||||||||||
7 | 5h7cA | 0.11 | 0.10 | 3.66 | 0.82 | MUSTER | DDPSQSANLLAEAKSLNVN-------AVKQLAEKAKEATDKEEVIEIVKELAELAKQSTDSELVNEIVKQLAEVAKEATDKELVIYIVKILAELAKQSTDVKQLAEVAKEATDKELVIYIVKILAELAKQSTDSELVNEIQLEEVAKEATDKELVEHIEKILEELEQQSAFYEILSLPNLNEEQRNAFIQSLKDDPSQSANLLAEAKSLNVNQAVKQLAEKAKEATDVIEIVKELAELAKQSTDSELVNEIVKQLAEVAKEATDKELVIYIVKILAELAKQSTDSELVNEIVKQLAEEATDKELVIYIVKILAELAKQSTD--SELVNEIVKQLEEVAK-EATDKELVEHIEK-----ILEELKKQS-- | |||||||||||||
8 | 2z6hA | 0.15 | 0.10 | 3.28 | 1.03 | CNFpred | PVDSVLFYAITTLHNLLLHQGAKMAVGGLQKMVALLNKTNVKFLAITTDCLQILAYGN-------QESKLIILASG---GPQALVNIMRTY--------------------TYEKLLWTTSRVLKVLSVCSSNKPAIVEA--------------------------------------------------------------------------------------GGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATMEGLLGTLVQLVTCAAGILSNLTNNYKNKMMVCQ--------VGGIEALVRTVLRA-----GDREDITEPAICALRHLTSRHQEAEMAQNAVRL---HYGLPVVVKLLHP | |||||||||||||
9 | 1vt4I | 0.11 | 0.11 | 3.80 | 0.52 | HHsearch-2 | DMPKSILSKEEIDHIIMSKDAVS----GTLRLFTLLSKQEEKFVEEVLRINYKFLPIKTEQRQP------SMMTRMYIEQRDRLYKLRQALLELRPAVLGLNKNCNSPETKWTSRSDHSSNIKLRSIQAEKSKPENWNAFNLLLTTRFKQVTDFLSAATTTHLDHHSMDCRPQDLPREVLTATWDNWKHVNCDESEPAEYRKDRLSVFPPSAHIPTILLSLIWFDSDVMVVVNKLHKLVEKSIYLELKVKLENEYALHR-SIVDHYNIPQYFYSHIGHHLKNIEHPERMTLFRM-V--FLDFR---FLEQKIRHDSTAWGSILNTLQQLKF-YKPYICDNDPKYEAILDFLPKNLICSKYTDLLRIALM | |||||||||||||
10 | 3txaA1 | 0.08 | 0.07 | 2.73 | 0.99 | Neff-PPAS | -ALKAGEAVEKLIDKITSNKDNRALVTYASTIFDGTEATVSKGVADQNGKALNDSVSWDYHKTTFTATTHNYSYLNLTNDANEVNILKSRIPKEAEHINGDRTLYQFG-----ATFTQKALMKANEILETQSSNARKGVPTMSYAINFNPYISTSYQNQFNSFLNKIPDRSGILQEDFIINGDDYQIVKGDGESFKLFSDRKVPVTG--GTTQAAYRVPQNQLSVMSNEGYAINSGYIYLYWRDYNWVYPFDPKTKKVSATKQIKTHGEPTTLYFNGNIRPKGYDIFTVGIGVNGDPGATPLEAEKFMQSISSKTENTNVDDTNKIYDELNKYFKTIVEEK---------------------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |