Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140
| | | | | | | |
| Seq | MMLVPLITVTVVAGTILVCYILYICRKKIRTVYNDNKIIMTKLKKIKSSNSSKSSKSTDSESDWEDHCSAMEQNNDVDNISRNEILDDDSFAGSLIWDNESNVMAPSTEHIYDSVAGSTLLINNDRNEQTIYQNTTVVINETETVEVLNEDTKQNPNY |
1 | 5aiwA | 0.11 | 0.09 | 3.18 | 0.83 | SPARKS-K | | -------------SNTNQSESEKIIKEFYKTVYNYEK----SQKEISMTTVKELA----TDNVYQELQNEINVNNSYQNTIQKSSVNENEIK---------ILAYESKDNSQQYLVTAPIHQVFNGTKNDFEINQLIQIKNQKITQRTTIQLGEE--- |
2 | 3e9pA2 | 0.14 | 0.08 | 2.58 | 0.38 | FFAS-3D | | --------YTAFSRLTLLLRALKTNEESAKMILLSDP---------TITIKSYHLWPSFTDEQWITIESQMRD----------------LILTEYGRKYNVNISALTQTEIKDIILG----------------------------------------- |
3 | 2jo1A | 0.23 | 0.04 | 1.39 | 0.25 | HHpred | | ---------LVIAGILFILGILIVLSRRCRCKFNQQQRTG---------------------------------------------------------------------------------------------------------------------- |
4 | 2l82A | 0.11 | 0.11 | 3.86 | 0.82 | MUSTER | | MSQIFVVFSS--DPEILKEIVREIKRQGVRVVYSDQDEKRRRERLEEFEKQGVDVRTVEDKEDFRENIREIWERYPQLDVVVIVTTDDKEWIKDFI----EEAKERGVEVFVVYNNKDDDRRKEQEFRSDGVD-VRTVSDKEELIEQVRRFVRKVGSL |
5 | 4rp8A | 0.10 | 0.03 | 0.94 | 0.52 | CNFpred | | ---WTTIICTAILVSLYWGITSNMMYKPTQEVTD-GCGFSIGHQQ----------------------------------------------------------------------------------------------------------------- |
6 | 2pffB | 0.11 | 0.11 | 3.84 | 1.01 | HHsearch-2 | | YLLSIPISCPLIGVIQLAHYVVTAKLLGELSYLKGATGHSQGLVTAVAIA------E---TDSWESFRKAITVRCY-EAYPNMLSISNLTQEISLVNGAKNLVVSGPPQSLYGLNRKAKAPSGLDQSRIPFSERKLKFPFHSHLLLINKDLVKQIPVY |
7 | 3jc8Na | 0.06 | 0.06 | 2.68 | 0.85 | Neff-PPAS | | --VLVLFAVVLIGAGVANYLWYDDRQSELEAHQAGVASTKARIAELEKIIGEVKNINTAEVEKKLAVLDALRKGRSGDALASA--TPKKVWVKTFSENNNADGSAVSHDEVAEFMRGLNGVVWTPKGMGRLVDRRRDSKTARVEMLTSDATIEEFPEA |
8 | 2m20A | 0.10 | 0.04 | 1.39 | 0.34 | HHsearch | | IPSIATGLVGALLLLLVVALGGLFIRRRHIV--RKRT-----LRRLLQERELVEPLTPSGEKLWS--------------------------------------------------------------------------------------------- |
9 | 2hi2A | 0.11 | 0.09 | 3.44 | 0.54 | SP3 | | LMIV-IAIVGILAAVALPAYQDYTARAQVSEAILLAEGQKSAVTEYYLNHGKWPENNTSA------------------GVASSPTDIKGKYVKEVEVKNGVVTATMLSSGVNNEIKGKSLWARRENGSVKWFCGQPVTRTDDDTVADAKDGKEIDTKH |
10 | 3cvzA2 | 0.10 | 0.08 | 3.06 | 0.60 | PROSPECTOR2 | | IITN-----------------QADAEAIVTKLNSLNEKTLIDIATSKTQDSEGKNVAATKALKVKDVATFGLKSGGSEDTGYVAGAVEDKYGKVGDSTAGIAINLPSTGLEYA---GKGTTIDFNKT------LKVDVTGGSTPSAVAVSGFVTKDDT |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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