>PF05914 (376 residues) LDLPVDYKEAAAIERRRRMEEERKSRIFNAKCRTIGVDMQALGQQVTDKKQQEDYERKRE LAFANDAIRNDKISQLLEKRQDADMRELNRAMNEFRMMHQQPDSRREFDLYDPDYLKKDK PARVSDDDPRCGVSSLQKFEGEDLNSKARRKYQQEQLREWSTEQKDERNQAEKNQKTADR LYELKMKELDQRAMELAKAEEDCRRAINIATKDYNNALARERDERERLKKQQEHDDNMTE IANHVFGDVLTENPAIAQSAFGPHRVITDRWKGMTPAQIEDIRRQQELQRQEKERADQEE KLRQAEWERQQNANARAGMLLEREAERKRRELERQQAEENRRLAKEQKGHLEFLDKEVYT NPPTASYFMQFNTSTR |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | LDLPVDYKEAAAIERRRRMEEERKSRIFNAKCRTIGVDMQALGQQVTDKKQQEDYERKRELAFANDAIRNDKISQLLEKRQDADMRELNRAMNEFRMMHQQPDSRREFDLYDPDYLKKDKPARVSDDDPRCGVSSLQKFEGEDLNSKARRKYQQEQLREWSTEQKDERNQAEKNQKTADRLYELKMKELDQRAMELAKAEEDCRRAINIATKDYNNALARERDERERLKKQQEHDDNMTEIANHVFGDVLTENPAIAQSAFGPHRVITDRWKGMTPAQIEDIRRQQELQRQEKERADQEEKLRQAEWERQQNANARAGMLLEREAERKRRELERQQAEENRRLAKEQKGHLEFLDKEVYTNPPTASYFMQFNTSTR | |||||||||||||||||||
1 | 5owvA | 0.08 | 0.07 | 2.69 | 1.38 | SPARKS-K | ADLLSKKDLEEVIVYTKESLKSEKIDFLSAKMASDFLQENYLFNELYAGEKSKIALRAYKKELHLELKNILSEYEMQNRLIKENKQGVSEENQKLLLELQKQNTLLKEAQDEISNSIAKI--------------------------DNLVLLLAKKLKERLIDEFKYLKNQKLNLSRILNIVDITTKDGINDILREIKFENIKKIEELKTKDDFDNGFEGFKDGISKNIDSIFQSEKFALLRLKIEKN-------------------------LKSDLYELETNLDTVIFDTFKEFKMSEILNSLNINGAFFEFLNDKLKKVLQSLKNQDANILNSFEENLEKIEKLKQLEMGLLNADKLHH-------------- | |||||||||||||
2 | 2tmaA | 0.12 | 0.09 | 3.09 | 2.02 | FFAS-3D | -----DAIKKKMQMLKLDKENALDR-------------AEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEADVAS-----------------------------------------LNRRIQLVEEELDR-AQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGK---------------------------CAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVT-KLEKSIDDLEDELYAQKLKYKAI------------------- | |||||||||||||
3 | 3tnfB | 0.10 | 0.10 | 3.52 | 1.30 | MUSTER | KRAQENIKKGEELEKKLDKLERQGKDLEDK--------YKTYEENLEGFEKLLTSLSEINEKMEAFSKDSEKLTQLMEKHDEKTVQSLQREHHDIKAKLANLQVLHDAHTGKKSYVNEKGNPVSSLKDAHLAINKDQEVVEHEGQFYLLQKGQWDAIKN--NPAALEKAQKDYSQSKHDLATIKMEALIHKLSLEMEKQLETINNLIMSTDPKENEEATKLLHKHNGLNLKLANLQDMLAVHRFNEKGEEVTSLNDAHYVIGKDQQLFNLGGKFYPIHKEQKILEKDEDWESIKDSPEKQKKAEHDFHKLQYETPMTVKKLVHHNKGLETTIHKERVEETKQQLEDNGKEKIEIANNISK---------------- | |||||||||||||
4 | 1u4qA | 0.10 | 0.08 | 3.03 | 1.03 | CNFpred | -------NFNTGIKDFDFWLSEVEALLA---SEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNSQADSLMKDKRETINGRFQRIKSMAAARRAKLNESHRLHQFFRDMDDEESW-------------IKEKKLLVSSEDYGDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVD-HWKELKQLAAARGQRLEESLEYQQFVANVEEEEAWINEKMTLVASEDYGD----------------------TLAAIQGLLKKHEAFETDFTVHKD--------RVNDVCANGEDLIKKNNHHVENITAKMKGLKGKVSDLEKAAAQRKAKLD--------------------- | |||||||||||||
5 | 3tnfB | 0.08 | 0.08 | 3.11 | 1.99 | Neff-PPAS | LDEYEQAIKRAQENIKKGEELEKKLDKLERQGKDLEDKYKTYEENLEGFEKLLTDSEELSLSEINEKMEAFSKDSEKLTQLMEKHKGDEKTVQSLQREHHDIKAKLANLQVLHDAHTGKKKGNPVSSLKDAHLAINKDQEVVEHEGQFYLLQKGQWDAIKNNPAALEKAQKDYSQSKHDLATIKMEALIHKLSLEMEKQLETINNLIMSTDPKENEEATKLLHKHNGLNLKLANLQDMLAVHRKEKSFFNEKGKDQQLFNLGGKFYPIHKEQKILEKDGKFYLLKQGEDWESIKDSPEKQKKAEHDFHKLQYETPMTVKKLVHHNKGLETTIHKERVEETKQQLEDNGKEKIEIANNISK---------------- | |||||||||||||
6 | 1c1gA | 0.09 | 0.07 | 2.61 | 1.56 | PROSPECTOR2 | MD--AIKKKMQMLKLDKENALDRADEAEADK--------KAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEE--------------------------------------ELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEI-------------------------------KTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKSIDDLEDELYAQKLKYKAISEELDHALNDM----------------TSI | |||||||||||||
7 | 5j1iA | 0.07 | 0.06 | 2.48 | 1.28 | SPARKS-K | RCQRCISELKDIRLQLEACETRTVHRLRLP------LDARECAQRIAEQQKAQAEVEGLGKGVARLSAEAEKVLAPTLRSELELTLGKLEQVRSLSAIYLELKTISLVGTQGAEEVLRAHEEQLKEAQAVP-------------ATLPELEATKASLKKLRAQAEAALRDELRGAQEVGERLQQRHERWRERVAQLLERWQAVLAQTDVRQRELEQLGRQLRYYRESADPLGAWLQDARRRQEQIQAM--------------------------DSQAVREQLRQEQALLEEIERHGEKVEECQRFAKQYINAIKDYELQLVTYKAQLEIQEYVDLRTHYSELTTLTSQYIKFISET------------------- | |||||||||||||
8 | 6irdB | 0.10 | 0.06 | 2.35 | 1.62 | FFAS-3D | ----------------------------------------RIE-DLKQMAAYLAHLAAQQAELNSLKAAHAAEHSTMQKLHCTQVDKIVAQYDKEKSTH----------------------------------------------EKILEKAMKKCLEIKKETEIKIQTLTTDHKSKVKEIVAQHTKEWSEMINTHSAEEQEIRDLHLSQQCELLRKLLINAHEQQTQQLKLSHDRESKEMRAHQAKI--------------------------SMENSKAIKAERERRVRELNSSNTKKFLEERK--RLAMKQSKEMDQLKKVQLEHLEFLEKQNEQAKEMQQMVKLEAE------------------------- | |||||||||||||
9 | 5nnvA | 0.12 | 0.07 | 2.55 | 1.26 | MUSTER | -------------------------------------------------------AKEEELAESSAISAKEAKIEDTRDKIQALDESVDELQQVLLVTSEELEK--------LEGRK---------------EVLKE--------RKKNAVQNQEQLEEAIVQFQQKETVLKEELSKQEAVFETLQAEVKQLRAQVKEKQQLSNELTELKIAAAKKEQACKGEEDNLARLKKELTETELALKEAKE------DLSFLTSESS----------------STSGEEKLEEAAKHKLNDKTKTIELIALRRDQRIKLQHGLDTYERELKEKRLYKQKTTLL-------------------------------------- | |||||||||||||
10 | 3edvA | 0.11 | 0.09 | 3.25 | 1.01 | CNFpred | -------QLNREVDDLEQWIAEREVVAGSH---ELGQDYEHVTMLQERFREFARDTGNIGQERVDTVNHLADELINSGHSDAATIAEWKDGLNEAWADLLELIDTRTQILAASYELHK-------------FYHDAKEIFGEELGDQNTVETLQRMHTTFEHDIQALGTQVRQLQEDAARLQAAYAGDKADDIQKRENEVLEAWKSLLDACESRRVRLVDTGDKFRFFSMVRDLMLWMEDVIRQIEAQ----------------------EKPRDVSSVELLMNNHQGIKAEIDARND--------SFTTCIELGKSLLARKHYASEEIKEKLLQLTEKRKEMIDKWEDRWEWLRL-------------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |