>PF05794 (455 residues) LRHDILFDPQLQFRPNLDGERGKRKKTIIDKYWNEIQKECSQFFVPSDSKSASPRSISRL PLLFATLRDILLSLLPYKDRQSVNDVMDIDLLIQQLSHGSFDFVSMARWLGEVFKSHCAP MRDVWVAEMINRFVTSSETGSVDKLVQGLRMIFQILEAMKLDVANHQIRILRPILIETAV DFEKDYFSQLIQHAKIDINDSLRWFYKSYLKNKANLGPYFDSAVSKTDDKNLKLVAVAGL INLLSCRNMATDFPSTLAFDHTRLILLRADIRQLVCVQLCVILYKQLVFNNYQNVSERNQ YLQPNVIQKIQEEVLAIVTDDNGNVKWTRNVNAIAIQLTKNVVTPINPTSTQNTGPLPQS MIEFGCGWLMKQIQPGSDVYGLMEEKIFKEVLTDVNSTLKKFDMDSKVSLNDSKNDNFTN KAKNAGTEMSNIAHRIATLVRFHWSVFGSHYREYL |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | LRHDILFDPQLQFRPNLDGERGKRKKTIIDKYWNEIQKECSQFFVPSDSKSASPRSISRLPLLFATLRDILLSLLPYKDRQSVNDVMDIDLLIQQLSHGSFDFVSMARWLGEVFKSHCAPMRDVWVAEMINRFVTSSETGSVDKLVQGLRMIFQILEAMKLDVANHQIRILRPILIETAVDFEKDYFSQLIQHAKIDINDSLRWFYKSYLKNKANLGPYFDSAVSKTDDKNLKLVAVAGLINLLSCRNMATDFPSTLAFDHTRLILLRADIRQLVCVQLCVILYKQLVFNNYQNVSERNQYLQPNVIQKIQEEVLAIVTDDNGNVKWTRNVNAIAIQLTKNVVTPINPTSTQNTGPLPQSMIEFGCGWLMKQIQPGSDVYGLMEEKIFKEVLTDVNSTLKKFDMDSKVSLNDSKNDNFTNKAKNAGTEMSNIAHRIATLVRFHWSVFGSHYREYL | |||||||||||||||||||
1 | 3ea5B | 0.10 | 0.09 | 3.41 | 1.01 | SPARKS-K | EGRILAALTLKNELVSKDSVKTQQFAQRWITQKNQIKTNALTALVSI-----EPRIANAAAQLIAAIADIELPHGAPELMKIMVDNTGLLALGYMCESADPQSNNILIAIVQGAQKAVRLAALNALADSLIFIKNNEREGERNYLMQVVCEATAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMK-----SPNDASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNSIKDVVPNLLNLLTRQNEDPEDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNIVMAFGSIMDGPDKVQRTYYVHQALPSILNLMND--QSLQVKETTAWCIGRIADSVAESIDPQQ----------HLPGVVQACLIGLQDH----PKVATNCSWTIINLVEQLAEATP------------SPIYNFYPALVDGLIGAASALTTMVEYVAETSASISTFVM | |||||||||||||
2 | 4iggA | 0.08 | 0.08 | 3.00 | 1.36 | FFAS-3D | -------------------ESQFLKEELVAAVERKQGDLMKAAAGEFADDPCSSVKRGNMVRAARALLSAVTRLLILADMADVYKLLVLKVVEDGILKNAGNEQDLGIQYKALKPEV--DKLNIMAAKRQQELKDVGHRDQMAAARGILQKNVPILTASQACLRDLIYKQLQQAVTGGELAYALNNFDKQIIVDPLSLEERLESIISGAALMADSSCTRDDRRERIVAECNAVRQALQDLLSEYMGNAGRKERSDALNSAIDKMTKKTRDLRRQLRKAVMDHVSDEAAKNGNEKEVKEYAQVFREHANKLIEVANLACSISNNEEGVKLQLEALCPQVINAALALAAKPQ-------SKLAQENMDLFKEQWEKQVRVLTDAVDDDFLAVSENHILEDVNK--------CVIALQEKDVDGLDRTAGAIRGRAARVIHVVTSYTEKVLEATKLL- | |||||||||||||
3 | 1vt4I | 0.11 | 0.08 | 2.83 | 0.53 | HHpred | -----------------------------------------------------QYQYKDILSVFEDA---------------FVDNFDCKDVQDM-PKSILSKE--------------------EIDHIIM------SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP-IKTEQR-QPS---------MMTRMYIEQRD-RLYNDNQVFA---KYNVSRLQPYLKLRQALLELRPAKN--VLIDGVLGS-GKTWVALDVCLSYKV--Q-CKM-----DFKIF----WLNNCNSPETVLEMLKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKLDHHSMTLTPDEVKS---LLLKYLDPQREVLTTNPRRLSIIAESIRDGLATWDNWVNKLTTIES----SLNVLE--PAEYRKMFDRLSVTILLSLIWFDVI----- | |||||||||||||
4 | 1st6A | 0.09 | 0.08 | 3.14 | 1.07 | MUSTER | VTT-----------KNTKSQGIEEALKNRNFTVEKMSAEINEIIRVLQL--TSWDEDAWASKDTEAMKRALALI--DSKMNQAKGWLGEQAIRQILDEAGKAGELCAGKERREILGTCKTL-GQMTDQLADLRARGQGAT--PMAMQKAQQVSQGLDLLTAKVENAARKLEAMTNSKQAIAKKIDAAQNWLADPNGEGEEHIRGIMSEARKVAELCEEPKERDDILRSLGEISALTAKLSDLRRHGKGDSPEARALAKQIATSLQNLQSKTNRAVANTRPLEGKIEQAQRWIDNPTVDDRGVGQAAIRGLVAEGRRLANVMM--GPYRQDLLAKCDRVDQLAAQLADLAARGEGES---PQARAIAAQLQDSLK---DLKARMQEAMTQEVSDVFSDTTTPIKLLAVAATAPSDTPNREEVFEERAANFENHAARLGATAEKAAAANKTTVEGIQ | |||||||||||||
5 | 5vchA | 0.09 | 0.08 | 2.93 | 1.21 | CNFpred | -----------------------ETRSLSAQALSYVSSLIEEE------GEINPQYAAKFASLIPSVVQVLDATIREGDTTNTKLIFNNDFLLLDSQLTGNTIADLVKLALQIAVNSDEDIRVFAVQFVTSALVYRKSKINQKLGPEITLAALKVASE-PALTALRLISNASGELSSQVGVPIIEHLPTMLSSSPFERRSILLAISVLVTGSPDYTLSQFDKIIPAT-EAVVQLAALKCIVQLSTNL--QDEVARYHEQYLPLVIDIIDSAKHVVIYKYATLALDGLLEFI-------AHNDIIKYLDPLMNKLFQMLETQ-QSPKLRAAIVSAIGSCAFAAGSG------------FVPYFKTSVQYLQQFIQ-LSEDDIELKALTFENISTMGRAV---------------KSAAFAEYAEPLVNAAYEAIKTSARLRESGYAFIANMAKVYG | |||||||||||||
6 | 1vt4I | 0.12 | 0.11 | 3.82 | 1.07 | HHsearch-2 | ----------MDFET---GEQYQYKSVFEDAFVDNFDCKDVQD-MPKSISKMSKDAVSGTLRLFWTLLEMVQKFVEEVLMSRQPSMMTRMYIEQRDDNQKYNVSRLQPYLKALLELR--PAKNTWVALDVQKMDFLKNCNSPETVLEMLQKLLYQIDPDHSSNIKLRIHSIQAELRRLSKPYQNAKAWNAFNLCTTRFKQVTDFLSAATTTHISLDHH--------SMTLTPDEV-KSLLLKYLDCRP--QDLPEVLTTNPRRLSIIAESIRDLTTIESSLNVLRKMFDRSVFP-PSAHIPTIKSDVMVVVNKLHKLVKQPKEPSIYLELKYALHRSIVDHYNIPKTFDSDLIPPYLDQY---FYSHIGHHLKNIEHPERMTLFRMLDFRFLEQKIRHSTAWNA----------SGSILNQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLI | |||||||||||||
7 | 4rxhB | 0.09 | 0.07 | 2.88 | 1.09 | Neff-PPAS | ----------------------KMVEGVFSSEIDKQIQATTKFRKLLSKERNPPIEEVIKTGVVGRFVEFLRSPHTATQTQVVIEAGAVPIFVELLGSPEPDVREQAVWALGNIAGDSPQCRCGALRPLLTLLGDSRKLSMLRNATWTLSNFCRGTPQPDWNTIAPALPVLAKLVYSLDDEVLIDACWAISYLSDGSNDKIQAVIEAGIPRRLVELLM--------HASTSVQTPALRSVGNIVTGDDVQTQVIINCG-ALPCLLSLLSSNKDGIRKEACWTISNITAGN--------SAQIQSVIDANIIPPLIHLLSHAD------LKTRKEACWAISNATSGGLQKPDQIRYLVAQGCIKPLCDLLA---CPDNKIIQVALDGLENILKVGELDKNAASINRYALFIEECG----------GMEKIHDCQTNNEEIYMKAYNIIEKYFS--- | |||||||||||||
8 | 1vt4I | 0.10 | 0.07 | 2.60 | 0.97 | HHsearch | -------------------------------------MDFET--G--E----HQYQYKDILSVFED---A------------FVDNFDCKDVQDM-PKSILSK--------------------EEIDHIIM------SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP-IKTEQR-QPS---------MMTRMYIEQRD-RLYNDNQVFA---KYNVSRLQPYLKLRQALLELRPAKNGVLGSGKTWALDVCLSYKVQ-----------CKM------DFKIFWLNL-KNCNSPETVLEMLQKLYQIDPNWTSRSNIKLRIHSIQAELRRLVTDFLSAATDHHSMTLTPDEVKS---LLLKYLDPQREVLTTNPRRLSIIAESIRDGLATWDNWK----------HVNCDKLTTIIESSLKMFDRLSVTILLSLIWFDVISDVM- | |||||||||||||
9 | 4xriA | 0.08 | 0.08 | 3.08 | 1.16 | PROSPECTOR2 | LENQALANESSELKNAFSAREFARQAALQAKWLTRVKQLALETLASPNSKLPRNQWPELMHALVRNASEFICETQDTDLRNSLVGHSNLTAVVQGARKEEPNNEAAITALGDSLEFVGNNFHEGERNYIMQVVCEATQAQDSRIQQGAFGCLNRIMALYYEHMRYYMEKALFGLTILGMCEEEIAIEDDNAEQMRPFYNFARVATNEVVPVLLQLLTKQDEDASDDEYNQAVGSTIIPPVIQFVEHNLRHADPEEKVLEPIVKMQPLIAMMERDSTAYALGRITEACSEAIFAGEPGAAQNPLTPHFNQSVTNLLTVTAPMNGDSTSLSAVASLSTVILQRLEETLPLQQQVVSVEDKLILEDMQTSLCTVLCGGKSSVPEGVMEAFAPFLYNALGNQERSTTLANQFATITAGPDGSSNKTNVLQPYVESIFALLNSIAQLADAFRQDWITAMI | |||||||||||||
10 | 4gbaA2 | 0.18 | 0.03 | 1.07 | 0.21 | SAM | ---------------------------------------------------------------------------------------------------SLHREIAIALWKLVFTQNNPPVLDQWLNFLTENPS-----GIKGISRDTWNMFLNFTQVIGPDLSNYSEDEAWPSLFDTFVEWEMER----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |