>PF05661 (303 residues) AGLVALLDDIAALARMAAASVDDIGAAAGRASAKAAGVVVDDTAVTPRYVTGFSPQRELP MIKRIAIGSLRNKLVFILPAILLMSQFLPWLLTPLLMLGGTYLCFEGAEKILHSVRGHET TGQQSAQEAADGERSQEREDQMVAGAIRTDFILSAEIMVISLNEVAAEAFWTRAIILVVV AIAITILVYGVVALIVKMDDIGLHLAETKSGAIASLGRGLVAGMPKLLKVLTVVGVVAML WVGGHILLVGTDSLGWHALYGFVHHLEEAAAHATGGAGAFVGWLVNTFFSAIIGLVVGFV VVG |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 | | | | | | | | | | | | | | | | |||||||||||||
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Seq | AGLVALLDDIAALARMAAASVDDIGAAAGRASAKAAGVVVDDTAVTPRYVTGFSPQRELPMIKRIAIGSLRNKLVFILPAILLMSQFLPWLLTPLLMLGGTYLCFEGAEKILHSVRGHETTGQQSAQEAADGERSQEREDQMVAGAIRTDFILSAEIMVISLNEVAAEAFWTRAIILVVVAIAITILVYGVVALIVKMDDIGLHLAETKSGAIASLGRGLVAGMPKLLKVLTVVGVVAMLWVGGHILLVGTDSLGWHALYGFVHHLEEAAAHATGGAGAFVGWLVNTFFSAIIGLVVGFVVVG | |||||||||||||||||||
1 | 3wdoA | 0.08 | 0.08 | 3.08 | 1.04 | SPARKS-K | LIVGGLAVFAAGSVIAALSD--SIWGIILGRALQGSGAIA---------------AAVMALLSDLTREQNRTKAMAFIGVSFGITFAIAMVLGPIITHKALFWMIAILATTGIALTIPNSSTHVLNRESGMVKGSFSKVLPRLLKLNFGIMCLHMLLMSTFVALPGQLADAAEHWKVYLATMLIAFGSVVPFIIYAEVKR-KMKQVFVFCVGLIVVAEIVLWNAFWQLVVGVQLFFVAFNLMEALLPSLISKESPAGYKGTAMGVYSTSQFLGVAIGGSLGGWIDGMQGVFLAGAMLAAVWLA | |||||||||||||
2 | 4ry2A1 | 0.12 | 0.11 | 3.75 | 1.07 | FFAS-3D | -----MMVKFAGFLKPLKKTVLCIFLASLLYTALGI----AGSFYIKFLFDDLIKFEKLNDLHIISAG-----FAVIFLLQIFLNYYRSILVTKL----GMSIDKSIMMEYYSHVLKLPMNSRKVGEIISRFMDASKIRQAISGATLTI--MIDTIMAVIGGILLYIQNSSLFFISFIIILLYGIIVTVFNKPIQNANRQIMEDNAKLTSALVESVKGMLYINLSSLTGIVAGLGGIVILWAGAYNVIKGNMSGG---QLLAFNALLAYFLTPVKNLIDLQPLIQTAVVASLGEIL------- | |||||||||||||
3 | 3rkoB | 0.12 | 0.10 | 3.63 | 1.20 | CNFpred | IGFNLVLDGLSLTMLSVVTGVGFLIHMYASWYM-----RGEE--------------GYSRFFAYTNLFIASMVVLVLADNLLLMYLGWEGVGLCSYLLIGFYYTDPKNGAAAMKAFV-----------------VTRVGDVFLAFALFILYNELGTLNFREMVELA-NNMLMWATLMLLGGAVGKSAQTWLADAMAGPTPVSALIHA---ATMVTAGVYLIARTHGLFLLHLVGIVGAVTLLLAGFAALVQTDIKRVLAYSTMSQIGYMFLALGAWDAAIFHLMTHAFFKALLFLASGSVILA | |||||||||||||
4 | 5xjjA | 0.12 | 0.12 | 4.19 | 1.00 | SPARKS-K | YGLVGALETLCGQAYGAYEKIGTYTYSAIASNIPICFIISPDISIAGSYAFWL-----IPVLFAQAIVIPLTRFLLPLLYTAVTTLLFHVFVCWVFVLGPAMATSVSFWFYAVILSCYVRFSSSCEKTRGFVSEDFVSCVKQFFQYGVPSAAMICLEWWLFELLILCSSVLSICLTTETLHYVISSGVAAAVSTRVSNNLGAPQVARVSVLAGLCLWLVESAFFSILLFTVVDYVADLSPLLCLSFILDGFTAVLNGVARGSQHIGAWNNIFSYYLVGAPVGVYLAFCGVVIGSTVQATVLAI | |||||||||||||
5 | 3qf4A1 | 0.14 | 0.12 | 3.96 | 0.99 | FFAS-3D | --LARYLKPYWIFAVLAPLFM-VVEVICDLSQPTLLARIVDEGIARGDF-------------------SLVLKTGILMLIVALIGAVGGIGCTVFASYASQNFGADLRRDLFRKV---------------LSFSISNVNRSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSISVLIFLIPPIVLLFSTDEVNRVVREREEYENENFRKALIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIG---SIMAYTNYLMQIMFSLMMIGNILNFIVRASASAVLEVL------- | |||||||||||||
6 | 4k1cA | 0.12 | 0.09 | 3.27 | 0.34 | HHpred | -----------------------------------------------------TAWRAVYDLQYILKASPLNFLLVFVPLGLIWGHFQLFLFNFLAIIPLAAILANATEELADKAGNTIGGLLNVESIIALKKGQVRIVQASMLGSLLSNLLLVLGLCFIFGGYRVQQTFNQTLLAIACASLLIILIVYVLF----------LYFQLGSHHLFEQQEETISHSLSVKSSLVILLGTTVIISFCADFLVGTIDNVVTGLSKTFIGLIVIPIVG---NAAEHVTSVLVAKMDLALGVAIGSSLQ- | |||||||||||||
7 | 3g61A1 | 0.09 | 0.09 | 3.29 | 0.77 | MUSTER | VSVLTMFGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSNSTNMSEADKRAMFAKLEEEMTTYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEDVHDVGELNTRLTDDVSKINEGIGDKI--GMFFQAMATFFGGFIIGFTRITVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPIAGVVEMKMLSGQALKDKKELEGSGKIATEAIEN------FRTVSLTREQKFETMYAQSLQIPYRNKKAHVFGITFSFTQAMMYFSYAACFRF | |||||||||||||
8 | 5gpjA | 0.13 | 0.12 | 4.12 | 1.19 | CNFpred | EAITGYGLGGSSMALFGRVGGGIYTKAADVGAD-NPAVIADNVGDNVGDIAGM-----GSDLFGSYAESSCAALVVASISSFGLNHELTAMLYPLIVSSGILVCLLTTLFATDFF--------------------EIKAVKEIEPALKKQLVISTVLMTIGVAVVSFVALSWQLFLCVAVGLWAGLIIGFVTEYYTPVQDVADSCRTGAATFGLALGYKSVIIPIFAIAISIFVSFTFAAMYGIAVAALGMLTIATGLAIDAYGPISDNAGGIARERTDALDAAGNTTAAIGKGFAIGSAALV | |||||||||||||
9 | 2pffB | 0.13 | 0.11 | 3.88 | 0.95 | HHsearch-2 | GSLLLVPTASFFI---------------------ASQLQEQFNKILPEPTEGFAADDE-PTTPAELVGKFLGYVSSVEPS--KVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQEND-------------TTLVKTKELIKNYITARHVLVGDLIKFSAENTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELYLKGATGGLVTA--VAIAETDSWESFFVSVRKAITVIGVRC---YEAYPN--TSLPPSILEDSLENNESHLPAGKQVEISLVNGPPQSLYGLNLTLRKAK | |||||||||||||
10 | 3g61A1 | 0.08 | 0.08 | 3.22 | 0.92 | Neff-PPAS | LTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSNMSEADKRAMFAKLEEEMTTYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNDVHDVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLT--REQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAACFRFG | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |