>PF05474 (582 residues) MKSIILFVLSLLLILEKQAAVMGQKGGSKGQLPSGSSQFPHGQKGQHYFGQKDQQHTKSK GSFSIQHTYHVDINDHDWTRKSQQYDLNALHKATKSKQHLGGSQQLLNYKQEGRDHDKSK GHFHMIVIHHKGGQAHHGTQNPSQDQGNSPSGKGLSSQCSNTEKRLWVHGLSKEQASASG AQKGRTQGGSQSSYVLQTEELVVNKQQRETKNSHQNKGHYQNVVDVREEHSSKLQTSLHP AHQDRLQHGPKDIFTTQDELLVYNKNQHQTKNLSQDQEHGRKAHKISYPSSRTEERQLHH GEKSVQKDVSKGSISIQTEEKIHGKSQNQVTIHSQDQEHGHKENKISYQSSSTEERHLNC GEKGIQKGVSKGSISIQTEEQIHGKSQNQVRIPSQAQEYGHKENKISYQSSSTEERRLNS GEKDVQKGVSKGSISIQTEEKIHGKSQNQVTIPSQDQEHGHKENKMSYQSSSTEERRLNY GGKSTQKDVSQSSISFQIEKLVEGKSQIQTPNPNQDQWSGQNAKGKSGQSADSKQDLLSH EQKGRYKQESSESHNIVITEHEVAQDDHLTQQYNEDRNPIST |
|
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 500 520 540 560 580 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | MKSIILFVLSLLLILEKQAAVMGQKGGSKGQLPSGSSQFPHGQKGQHYFGQKDQQHTKSKGSFSIQHTYHVDINDHDWTRKSQQYDLNALHKATKSKQHLGGSQQLLNYKQEGRDHDKSKGHFHMIVIHHKGGQAHHGTQNPSQDQGNSPSGKGLSSQCSNTEKRLWVHGLSKEQASASGAQKGRTQGGSQSSYVLQTEELVVNKQQRETKNSHQNKGHYQNVVDVREEHSSKLQTSLHPAHQDRLQHGPKDIFTTQDELLVYNKNQHQTKNLSQDQEHGRKAHKISYPSSRTEERQLHHGEKSVQKDVSKGSISIQTEEKIHGKSQNQVTIHSQDQEHGHKENKISYQSSSTEERHLNCGEKGIQKGVSKGSISIQTEEQIHGKSQNQVRIPSQAQEYGHKENKISYQSSSTEERRLNSGEKDVQKGVSKGSISIQTEEKIHGKSQNQVTIPSQDQEHGHKENKMSYQSSSTEERRLNYGGKSTQKDVSQSSISFQIEKLVEGKSQIQTPNPNQDQWSGQNAKGKSGQSADSKQDLLSHEQKGRYKQESSESHNIVITEHEVAQDDHLTQQYNEDRNPIST | |||||||||||||||||||
1 | 5jcss | 0.08 | 0.08 | 3.04 | 1.99 | SPARKS-K | TVSSLRQLGRKIQNLINELSKYMGCHDSIVKIHLGEQTYTSGDKPGTFEWRAGVATAVKEGRWVLIEDIDKAPTDVLSILLSLLEKRELTIPSRGETVKAANGVRINEDHQKDSSNKIYNLNMRIWNVIELEEPSEEDLTHILAQKFPILTNPKLIDSYKNVKSIYMNTKFISLNKGAHTLDILFKNNGINKPDQLIQSSVYDSIFSEAADCFAGAIGEFKALEPIRISLFLTQHVPTLENLDDSIKIGRAVLLKEKLNIQKKSMNSTLFAFTNHSLRLMEQISVCIQKMLAKKLTVINVSQQTETGDTVAVPIQENFETLFNATFSLKKNEKFHKMLHRCFNKNQWKNVVKLWNEAYKMAQSILKITNTENENENAKKKKRRLNTHEKKLLLDKWADFNDSVKKFEAQSSSIENSFFNFVEGSLVKTIRAGEWLLLDENLATADEPDSRSILLSEKGDAEPIKAHPNPATDVPMGIRSRHSPERDITDLLSIIDKYIGKYSVSDEWVGNDEAKKLSDNNTIVDGSNQKPHFSIRTLTRTLLYVTDIIHIYGLRRSLYTLLDQKSEAIIEKFTLGRLKNVKS | |||||||||||||
2 | 3chnS | 0.11 | 0.10 | 3.62 | 1.67 | MUSTER | -KSPIF----------GPEEVNSVEGNS--SITCYYPPTSVNRHTRKY--CRQGARGG------------CITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDSGRGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTIN--PFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQ-QAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGR-HSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVA-PYNRKESKSIKYWCLEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKHFPCKFSSYEKYWCKNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWQGHFYGETAAVYEERKAAGSRDVSLAKADAAPDEKVLDSGFREIENKAIQDPR-------- | |||||||||||||
3 | 3cnfB | 0.07 | 0.07 | 2.85 | 3.64 | Neff-PPAS | -----VLNINLRALMEANVTADDRIKALQAHSMISTQFHGPNQGALRPELAFDHDHIIRCAANYPRLEGIIVQINTGYVASANVIRPVSEKRYFPENLEQNQSAARLVSAVKARASEADISSIHLAIAREVSPMFNVHELKKIAESFEDPSFNRIKGDIQNVLLLFFSRWYPVEYGIFVQRGATYTINAAGEFEFSGRNEKWDQALYLSEHVPLAGANTIIAIMRLFTPQGFLRTDDLAIAANFPRASRNPQTYITNQRGTVTNEFASRFRTIVATLANVVNERAVQDDMQKATRSCTKQWLRHLETQFDNIAVAHTDHLSVVYATHVAVVLYQSGVINGPASTYLRENEVLVMPDYYDVVSRFANANLQMNNNRYHESVLEIADIFDQADFIQTSDAVRQLRALMPTLSTSQIRHAIERIAQITDVDSTDYGKLTLRFLGTLTRSLKMQNLRYDDQIDIEAFRWSRYFLDELQLRRLSVGQYAHRLFSSSLANKRNRVTYTHPPTGMAYPSPTGRPHVHMTINERAGMSKLVADNIIASVIKSNWVVDILDIAEVMTPSEGYTQHVDAESIMTAPKGKLFH | |||||||||||||
4 | 2nbiA | 0.06 | 0.05 | 2.33 | 1.98 | PROSPECTOR2 | QPSD------------------LNPSSQPSECADVLEECPIDECFLPYSDASRPPSCLSFGR--------PDCDVLPTPQNINCPRCCATECRPDNPMFTPSPDGSPPICSPTMLPTNQPTP---------PEPSSAPSDCGEVIEECPLDTCFLPTSDPARPPDCTAVGRPDCDVLPFPNNLGCPACCPFEC---------SPDNPMFTPSPDGSPPNCSPTMLPTPQPSTPTVITSPAPSSQPSQCAEVIEQCPIDECFLPYGDSSRPLDCTDPAVNRPDCDVLPTPQNIN-------CPACCAFECRPDNPMFTPSPDGSPPICSPTMMPSPEPSSQPSDCGEVIEECPIDACFLPKSDS--------------------ARPPDCTAVGRPDCNVLPFPNNIGCPSCCPFECSPDNPMFTPSPDGSPPNC---SPTMLPSPSPSAVTVPLTPAPSSAPTRQPSSQPTGPQPSSQPSECADVLELCPYDTCF------LPFDDSSRPPDCTDPSVNRPDCDKLSTAIDFTCPTCCPTQCRPDNPMFSPSP--------DGSPPVCSPTMMPSPLPSPTE | |||||||||||||
5 | 1zvoC | 0.07 | 0.06 | 2.42 | 1.77 | SPARKS-K | -------------------------------------------RLQLQESGPGLVKPSETLSLTCIVSRQPPGKGLEWIGGVY-----YTGSIYYNPSLRGRVTISVDTSRNRSMSAADTAMYYCARGN------PPPYYDIGTGSDDGIDVWGQGTTVHVSSA-------PTKAPDVFPIISGCRHPKDNSPVVLAC--LITGYHPTSVTVTWYMGTQSQPQRTFPEIQRRDSYYMTSSQLSTPLQQWRQGEYKCVVQHTASKSKKEIFRWPESPKAQASSVPTAQPQAEGSLAKATTAPAT---TRNTGRGGEEKKKEKEKEEQEERETK---TPECPSHTQPLGVYLLTPAVQDLWLRD--------KATFTCFVVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHPSL--PPQRLMALREPAAQAPVKLSLNLLASSDPPEAA--------------SWLLCEVSGFSPPNILLMWLEDQREVNTSGFAPARPPPQPGSTTFWAWSVLRVPAPPSPQPATYTCVVSHEDSRTLLNASRSLEVSYVTDH | |||||||||||||
6 | 3cnfB | 0.10 | 0.08 | 3.05 | 0.51 | FFAS-3D | IQNVLLLFFSRWY--PVEYGIFVQRGATAGEFEFSGRNEKWDQALYLSEGFLRTDDLAIAANF-----PRASRNPQTYIPYTNQRGTVTNEFASRFRTIVATLANVVDDMQKATRSCTKQWLRHLVVYATMSNFMLNFTNNFATHVAVVLYQSGVINGPASTYLRE------NEVLVVMPDYYDVVSRFANANLQMNNNRYHESVLEIADIFDQADFQTSDAVRQLRALMPTLSTSQIRHAIERIAQITDVDSLTLRFLGTLTRSLKMQNAQIRRIRPDGRYDDQIDIEAFRWSRYFLDELQLRRLSVGLRLGVRIMYLTDDDPDPDFVPDVPEGYVAVQYAHRLFSSSLANKRNRVTYTHPPTGPTGRPHVHMTINERAGMSKLVADNVDILDIEYTAEVMTPSEGYTQHVDAESIMTAPKGKLF------HLQFMDGLLRPEASGEDMRLPLQPISVARSMRAIVNHNEVDRPREMDTGT-------------------LSRNG----DLLYSPVANGQ------------------------------------------------------------- | |||||||||||||
7 | 4b4tP1 | 0.28 | 0.01 | 0.42 | 0.31 | HHpred | --NDCNSALDQLLVLEKKTRQASDLASSK-EV---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
8 | 1zvoC | 0.08 | 0.07 | 2.59 | 1.61 | MUSTER | ---------------------------------------------RLQLQESGPGLVKPSETLSLT---IVSGGPIRRTGYY--IRQPPGKGLEWIGGVYYTGSIYYNPSLRGRVTISVDTSRNQFSLNLRSMSAADTRGNPPPYYDIGTGSDDGIDVWGQGT-TVHVSSAPTKAPDVFPIISGCRHPKDNSPVVLA---LITGYHPTSVTVTWYMGTQSQPQRTFPEIQRRDSYYMTSSQLSTPLQQWRQGEYK-----VVQHTASKSKKEIFRWPESPKAQASSVPTAQPQAEGSLAKATTAPATTRNTGRGGEEKKK--EKEKEEQEERETKTPECPSHTQPLGVYLLTPAVQDLWLRDKAT-VGSDLKDAHLT---EVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTS-TLNHPSLPPQRLMALREPAAQAPVKLSLNLLASSDPPEAASWLLCEVSGFSPPNILLMEDQREVNTSGFAPARPPPQPGSTTFWAWSVPAPPSPQPASHEDSRTLLNASRSLEVSYVTDHGPM------------------------------------ | |||||||||||||
9 | 2pffB | 0.14 | 0.12 | 3.93 | 0.77 | HHsearch-2 | LVPTASFFIASQLQE-----------------------------------QFNKILPEPTEGFAADDEPTTPA---ELVGKFLGYVSSL-VEPSKVGQFDQ--VLNLCLTEFENCYLEGNDIHALAAKLLQENDTTKEIKNYITA---RIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGG-----QGNTDDYFEYQTYHVLVGDLIRTTLDAEKVFTQGLNILEWLENPSTPDKDYLLSIPISCP-----LIGVIQLAHYV--VTAKLLGFTPGELRSYLKGATG---HSQGLVTAVAIAE----TDSWESFFVSV------RKAITVLFFI---GVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQ--EQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVS----------------GPPQSLYGLNLTLRKAKGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVP-----------AS--DLINKDLVKNNNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIILPVKWETTTQFKATHILDFGPGGASGLGVLT-HRNKDINPDDD | |||||||||||||
10 | 2cseB | 0.08 | 0.08 | 2.99 | 3.28 | Neff-PPAS | IDEPLVVV-----------TEHAIANFTKAEMALEFNREFLDKLRVLSVSPKYSDLLTYVDCYVGVSARQALNNFQKTPTRQTMYVDSIQAALKALEKWEIDLRVAQTLLPTNVPIGEVSCPMQSVVKLLDDQLPDDSLRYPKEAAVALAKRNGGIQWMDVSEGTVMNEAVNAVAASALAPSASAPPLEEKSKLTEQAMDLVTAAEPEIIASLVPVPAPVFAIPPKPADYNKIDEATWLRMIPKTMGTLFQIQVTDNTGTNWHFNLRGGTRVVNLDQ--------IAPMRFVLDLGGKSYKETSWDPNGKKVGFIVF-----------QSKIPFELWTAASQIGQATVVNYVQLYAEDSSFTAQSIIATTSLAYNYEPEQLNKTDPEMNYYLLATFIDSAAITPTNMTQPSPLSAGEVTVKGAVVSEVVPAELIGSYTPESLNASIDRASKIAEAIKIDDDAGPDEYSPNSVPIQGQLAISQLETGYGVRIFNPKGILSKIASRAMQAFIGDPSTIITQAAPVLSDKNNWIALAQGVKTSLRTKSLSAGVKTAVSKLSSSESIQNWTQGFLDKVSTHFPAP- | |||||||||||||
|
|
References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |