Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300
| | | | | | | | | | | | | | | |
| Seq | LSMKNLHRRFKLEDSEENGVFKYRPRYYLYKHGYFYPPLKQFAVQGNSDSSEENGNGDSSEEEEEEDETSNEEENNEDSNGNEDEDSEAENTTLSTITPGYGEETTPGTDYIGLAAIQLPKKAGDIGNKATKKEESDEEEEEEENENENNEAEVDGNEQAVNGTSTNSTEVENGNGSSGADNGEEGDKESVTEANTPGTTMSAGQSTGSSKTTPSPNGVFEPTTPAPEVYGSTPPPYGKTTTAEYGAEYEQTGANEYDPGYEVYDNENGGPRGDNYRAYEDEYSYYKGRGYDGYDGQDYY |
1 | 4nl6A | 0.13 | 0.12 | 4.04 | 1.61 | SPARKS-K | | MAMSSGGSGGGVPEQEDSVLFR--------------------RGTGQSDDSDIWDDTAHALKNGDICETSGKPKTTPKRKPAKKNKSQKKNTAASLQQWKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGN---------REEQNLSDLLSPI-CEVANNIEQNAQENENESQVSTDESENSRSPGNKSDNIKPKSAPWNSFLPPPPPMPGPRLGPGKPGLKFNGPPPPPPPPPPHLLSCWLPPFPSGPPIPICPDSLDDADALGSMISWYMSGYGYYMG----FRQNQKEG |
2 | 2tmaA | 0.13 | 0.12 | 4.06 | 1.25 | MUSTER | | --MDAIKKKMQMLDKEN---------------------LDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEETNNLKSLEAQAEKYSQKEDKYEEEKVLSDKLKEAETRAEFAERSVTKLEKSIDDLE-DELYAQKLKYKAIS-EELDHALNTSI- |
3 | 2tmaA | 0.11 | 0.10 | 3.62 | 4.29 | Neff-PPAS | | --MDAIKKKMQMLKLDKENA------------------LDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSL---EAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHA |
4 | 5gaoE | 0.05 | 0.05 | 2.44 | 1.47 | PROSPECTOR2 | | -AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAARAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANKK |
5 | 4btgA | 0.12 | 0.11 | 3.92 | 1.30 | SPARKS-K | | ETTSYIGQTSAIDMGQPSHVVVYE-DWQFAKEITAFTPVKLANNSNQRFLDVEPGDRMSATLAPIGNTFAVKNRTAVYEAVSQRGTVNSNGAEMTLGFPSVVERDYALDRD-PMVAIAALRTGIVDESL-EARASNDLKRSMFNYYAAVMHYAVAHNPEVVVSEHQGVAAEQGSLYLVWNVRTELR------------IPVGYNAIEGGSIRTPEPLEAYNKPIQPSEVLQAKVLDHEASTEFAYEDAYSVTIRNKEVKEFELLGLGQRILKPTVAHAIQMWYSWFVEDDRTLAAARRTS |
6 | 4bmlA | 0.11 | 0.09 | 3.35 | 0.43 | FFAS-3D | | -------------------------RYATALKLFSGEVFTAFNNASKGLVRSYDLRGGKSKQFMFTGKLSAGYHTPGTPIVGDAGIKANEKTLVMDDLLVSSQFVYS----------------LDEIFSQYSTRAEVSKQIGEALATHYDERIARVLAKASAEASPVTGEPGGFHVNIGAGNTNDAQAIVDGFFEAAAVLDERSAPQEGRVAVLSPRQSSVDTNILNREIGNSQGDMNSGKGLYSIAGIRILKSNNLAGLYGQDLSSAAVTGENN--DYQVDASALAGLIFH-------- |
7 | 4v1ab | 0.17 | 0.03 | 0.88 | 0.43 | HHpred | | FHTFDFYKKHQDADDSVTRVFHQEPVFFVRPPPY-HPKQKRFPHRQPL------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
8 | 2atyA | 0.09 | 0.09 | 3.42 | 1.16 | MUSTER | | GRISYYSTPIAVGTV--SGTFRLIGEKSLLCITKDKVDGTAPKCEYFNKYSSCPEPIVPGGYKIRGSTPYRHGDSACKTNFSMNGNKQANNMWGPTRLPTCVSVFPLEGSIEGRGGSELADPEVPRDCGCKPCICTVPEVSSVFIFPPKPKDVLTITLTVVVDISKDDPEVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKERVNSAAFPAPIEKTISKTKGRPKAPQLYTIPPPKEQMAKDKMITDFFPEDITVQWNGQPAENYKNTQPIMNTNESYFVYSKNWEAGNTFT |
9 | 4v1ab | 0.14 | 0.10 | 3.42 | 0.54 | HHsearch-2 | | LPPPKVSRTQRIPLEAVCGPYHQREYCGLFHGATFVPR-VPLHVAYAVGEPVYHGN----------EVTPTEAAQAEVT-----YEADGSLWTLLLTNLDGHLLEPDAETNIPGNRVTFPARGSGFHKQDKR-IDFSG--D-----------T-----RPSP-----CYQL-AQRTFHTFDFYK--------KHQDAMTPAGLAF----FQC------RWDDSVTFHQLLDMREPVF----------EFVRP------PPY--HPKQKRFPHRQPLR-YLDRYRDSHEPTYGIY------ |
10 | 2bsgA | 0.09 | 0.08 | 3.23 | 3.20 | Neff-PPAS | | --VEVLDKNIGILKTSLETANSDIKT--IQINKKDISDLKTLTSEHTEILNGTNNTVDSILADIIRNDLLWIKRELMKHRIINNTDVITSQGIRIEVGNLREELVYSRLNEIDTKQTTVESDISAIKTSISIITSVNTNTDNIASINLEIKQRLTVIETSIIKGQIKDNTTSILRANVSWLNQIVSLLNRVSTIETSVSGLNNAVQNLQVEIGNNSAGIKGQVVALN---TLVNGTNPNGSTVEERGLTNSIKANETNIASVTQEVNTAKGNISSLQGDVQALQEAGYIPEAPRDGQAYV |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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