>PF05420 (360 residues) SQLTEAKAPMSFSFVPFDTSRVTLGVTPVTLDAGSSSGSANNRFGTGALHGELSPLAQAQ QNASNTPASPSQYIAKESSGSQSESGVELNAALSGDNYKVDVGSTPLGQDLTSLVGGAQW APKLGDFTTLTVTAERRAVNDSLLSYVGARDAYTGSKWGQVTKNGGSVNLSYDDGDAGFY AGGGYYSYLGDHVTSNKAVNANVGLYIRPYRYDDRELKTGVNVGYMNFDKNLSYFSYGQG GYFSPQNYVSVSFPVEYTQKYDDWDLKLSGSVGYQSYTQDESPYFPEDSNLQNQLEQLVA DGKAQEAFYSGGSKNGIGWNAGIGGNYHLNKNMQIGGQVGYDTFGDYNESKAQLYFRYLM |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | SQLTEAKAPMSFSFVPFDTSRVTLGVTPVTLDAGSSSGSANNRFGTGALHGELSPLAQAQQNASNTPASPSQYIAKESSGSQSESGVELNAALSGDNYKVDVGSTPLGQDLTSLVGGAQWAPKLGDFTTLTVTAERRAVNDSLLSYVGARDAYTGSKWGQVTKNGGSVNLSYDDGDAGFYAGGGYYSYLGDHVTSNKAVNANVGLYIRPYRYDDRELKTGVNVGYMNFDKNLSYFSYGQGGYFSPQNYVSVSFPVEYTQKYDDWDLKLSGSVGYQSYTQDESPYFPEDSNLQNQLEQLVADGKAQEAFYSGGSKNGIGWNAGIGGNYHLNKNMQIGGQVGYDTFGDYNESKAQLYFRYLM | |||||||||||||||||||
1 | 4y25A | 0.10 | 0.07 | 2.81 | 1.23 | SPARKS-K | ----------------DVHNLAELRIAGSTGIDAEGPDSGKHDVDLTTIVYS---------PPLKDNWRGFAGFGYADGGIVRDWLAGVEWRSRNIWLEAEYAERVFNEHKPGARLSGWYDF--NDNWRIGSQLERLSHRVPLRAM------KNG-----VTGNSAQAYVRWYQNERR-KYGVSWAFTDFSD--SNQRHEVSLEGQERIWSSPYLIVDFLPSLYYEQNTEHDTP-------YYNPIKTFDIVPAFEASHLLWENSWEQIFSAGVGASWQKH-------------------------------YGTDVVTQLGYGQRISWNDVIDAGATLRWEKRDREHNLYVEFDMTFRF | |||||||||||||
2 | 4y25A | 0.10 | 0.07 | 2.79 | 1.10 | FFAS-3D | -----------------NLAELRIAGSTGIDAEGPDSGKHDVDLTT-----------IVYSPPLKDNWRGFAGFGYADGGIVRDWLAGVEWRSRNIWLEAEYAERVFNHE-HKPGARLSGWYDFNDNWRIGSQLERLSHRVPLRAMK-----------NGVTGNSAQAYVRWYQNERKYGVSWAFTDFS----DSNQRHEVSLEGQERIWSSPYLIVDFLPSLYYEQNTEH-------DTPYYNPIKTFDIVPAFEASHRSYENSWEQIFSAGVGASWQKH-------------------------------YGTDVVTQLGYGQRISWNDVIDAGATLRWEKR-PYHNLYVEFDMTFRF | |||||||||||||
3 | 4y25A | 0.12 | 0.09 | 3.15 | 0.85 | HHpred | -----------------NLAELRIAGSTGIDAEGPDSGKHTTIVYSPPLKDNWRGFAG--------F-----G-YAD-GGIVRD--WLAGVEWRSRNIWLEAEYAERVFHEHKPGARLSGWYDFNDNWRIGSQLERLSHRVPLRAMK---N--------GVTGNSAQAYVRWYQERRKYGVSWAFTDFS----DSNQRHEVSLEGQERIWSSPYLIVDFLPSLYYEQNTE-------HDTPYYNPIKTFDIVPAFEASHRSNSWEQIFSAGVG--ASWQKH-------------------------------YGTDVVTQLGYGQRISWNDVIDAGATLRWEKR-PYDEHNVEFDMTFRF | |||||||||||||
4 | 3v89A2 | 0.11 | 0.10 | 3.60 | 1.08 | MUSTER | GEGRQWGIQSKTAYSGKNRGLTQSIALAGRIGGAEALLIHTGRRAGEIRAHEDA---GRGVQTVSTRDYTGPNRFLADPLSYESRSWLFRPGFRFEN--------------KRHYIGGILEH-----TQQTFDTRDMTVPAF----------FTNGENGALVGAEYGTGVFYDETHTKSRYGLEYVYTNADKDTWADYARLSYDRQGVGLDN----HFQQTHCSADGSDKYCRPSADKPFSYYVIYGESHRLLQAAFKKSFDRHNLSVNLGFDRFGSNLRHQDYYYQHANGNVVTGQICRLGNNTYTDCTPRSINGKSYYAAVRDNVRLGRWADVGAGLRYDYTGTHRTLSWNAGIVLKP | |||||||||||||
5 | 3kvnA | 0.15 | 0.11 | 3.82 | 1.92 | CNFpred | --------------------RGFVGGGGQRLDFDSQ---------DSAA-----------------------------SGDGNGYNLTLGGSYRIEAWRAGVAAG-------FYRQKLEAGA---KDSDYRMNSYM------ASAFVQYQE---NRWWADAALTGGYLDYDDLK--RKFALGGGERSEKGDTN--GHLWAFSARLGYDIAQQADSPWHLSPFVSADYARVEVDGYS-ATALDYDDQKRSSKRLGAGLQGKYA-SDTQLFAEYAHEREYEDD------TQDLTMSLNSLP----GNRFTLEGYTPQDHLNRVSLGFSQKLAPELSLRGGYNWRKGEDDTQQSVSLALSLDF | |||||||||||||
6 | 4y25A | 0.11 | 0.09 | 3.08 | 1.81 | HHsearch-2 | ---------------DVHNAELRIAGSTGIDAEGPDSGKHTTIVYSPPLKDNWRGFAG-------------FG--YADGGIVRD--WLAGVEWRSRNIWLEAEYAERVFHEHKPGARLSGWYDFNDNWRIGSQLERLSHRVPLRAMK-----------NGVTGNSAQAYVRWYQNRRKYGVSWAFTDF----SDSNQRHEVSLEGQERIWSSPYLIVDFLPSLYYEQNTE-------HDTPYYNPIKTFDIVPAFEASHRENSWEQIFSAGVG--ASWQKH-------------------------------YGTDVVTQLGYGQRISWNDVIDAGATLRWEKRPYDGELYVEFDMTFRF | |||||||||||||
7 | 4y25A | 0.09 | 0.07 | 2.64 | 1.69 | Neff-PPAS | -----------------NLAELRIAGSTGIDAEGPDSG-------------KHDVDLTTIVYSPPLKDNWRGFAGFGYADGGIVRDWLAGVEWRSRNIWLEAEYAERVFNEHKPGARLSGWYDFNDNWRIGSQLERLSHRVPLRAMKN-----------GVTGNSAQAYVRWYQNERKYGVSWAFTDFS----DSNQRHEVSLEGQERIWSSPYLIVDFLPSLYYEQNTEH-------DTPYYNPIKTFDIVPAFEASHLLWENSWEQIFSAGVGASWQKH-------------------------------YGTDVVTQLGYGQRISWNDVIDAGATLRWEKRPREHNLYVEFDMTFRF | |||||||||||||
8 | 4y25A | 0.11 | 0.09 | 3.08 | 1.94 | HHsearch | --------------DVHNLAELRIAGSTGIDAEGPDSGKHTTIVYSPPLKDNWRGFAG--------F-----G--YADGGIVRD--WLAGVEWRSRNIWLEAEYAERVFHEHKPGARLSGWYDFNDNWRIGSQLERLSHRVPLRAMK---N--------GVTGNSAQAYVRWYQNRRKYGVSWAFTDFS----DSNQRHEVSLEGQERIWSSPYLIVDFLPSLYYEQNTE-------HDTPYYNPIKTFDIVPAFEASHRENSWEQIFSAGVGA--SWQKH-------------------------------YGTDVVTQLGYGQRISWNDVIDAGATLRWEKRPYDGEHYVEFDMTFR- | |||||||||||||
9 | 4y25A | 0.10 | 0.07 | 2.67 | 1.22 | PROSPECTOR2 | DVHNLAELRIAGSTGPPLKDNWRGFAGFGYADGG----------------------------------------------IVRDWLAGVEWRSRNIWLEAEYAERVFNHE-HKPGARLSGWYDFNDNWRIGSQLERLSHRVPLRAMKN-----------GVTGNSAQAYVRWYQNRRKYGVSWAFTDFS----DSNQRHEVSLEGQERIWSSPYLIVDFLPSLYYEQ-------NTEHDTPYYNPIKTFDIVPAFEASHRSYENSWEQIFSAGVGASWQKH-------------------------------YGTDVVTQLGYGQRISWNDVIDAGATLRWEKRDREHNLYVEFDMTFRF | |||||||||||||
10 | 4y25A | 0.11 | 0.06 | 2.29 | 0.38 | SAM | --------------------------------------------------------------------------------------WLAGVEWRSRNIWLEAEYAERVFHEHKPGARLSGWYDFNDNWRIGSQLERLSHRVPLRAMK-----------NGVTGNSAQAYVRWYQNRRKYGVSWAFTDFS----DSNQRHEVSLEGQERIWSSPYLIVDFLPSLYYEQNTE-------HDTPYYNPIKTFDIVPAFEWRSYENSWEQIFSAGVGASWQKHY---------------------------------GTDVVTQLGYGQRISWNDVIDAGATLRWEK----------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |