Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180
| | | | | | | | | |
| Seq | GWGYWGSWGKSILSTATATVATVGQGLTQVIEKAETSLGIPSPEELSAQAEKDKTDDSDSSKENKDEEEKTYGMGGAMGMISSGSMGMLSSLTTVVQSTGKTVISGGLDALEFIGKKTMDVIAEGDPGFKKTKGLMNRNSTLSQVLREAKEREEQQKAENVTSETDKKAHYGLLFDEFQGL |
1 | 1ls4A | 0.10 | 0.08 | 3.05 | 1.03 | SPARKS-K | | ------RPDAAGHVNIAEAVQQLNHTIVNAAHELHETLGLPTPTEQANAFKTKIAEEKHQGSVAEQLNAFARNNNSIHDAATSLNLQD------------------QLNSLQSALTNVGHQWQDIATKTQASAQ--EAWAPVQSALQEAAEKTKEAAANLQNSIQSAVQKPAN-------- |
2 | 5td8B | 0.09 | 0.08 | 2.93 | 0.69 | FFAS-3D | | ------------LQELVICLQSCDDYMVTLYKQIIENFMGISVESLLNSSNQETGDGHLQEENENIYLDT------------LNVLVLNKICFKFFENIGVQDFN-MTDLYKPEAQRTQRLLSDCNSFILQMESLLGQINKLNDEIKQLQKDFEVEVKEIEIEYSLLSGHINKYMNE---- |
3 | 4hm9A | 0.15 | 0.12 | 4.09 | 0.38 | HHpred | | ----------KVLDHAMIGPHKVILGLRTIFPLFMKSPRGTTEKEHEEHVCSILAS-----L--L----RNLR-----------GQQRTRLLNKFTENDSLRRLDAGLFVLQHICYIMAEICNANVPQIRQRVHILNRGSSIKIVRHIIKEYAENIGDGRPEFRENEQKRILGLLENF--- |
4 | 1ls4A | 0.14 | 0.12 | 4.17 | 0.82 | MUSTER | | ---RPDAAGH---VNIAEAVQQLNHTIVNAAHELHETLGLPTPDEALNLLTEQA--NAFKTKIAEVTTSLKQEAEKHQGSVAEQLNAFARNLNNSIHDAATSL--NLQDQLNSLQSALTNVGHQWQDIATKTQASAQEAAPVQSALQEAAEKTKEAAANLQNSIQSAVAN----------- |
5 | 1t72A | 0.14 | 0.13 | 4.31 | 0.60 | CNFpred | | ---------FKELEETKEQVIKMAKLVQEAIDKATEALNKQNVELAEEVIKGDDTIDLLEVD-----IERRCIRMIALYQPEAGDLRMIMGIYKIVSD-----LERMGDEAENIAERAILLAEEPPLPYVNINFMSE---IVKEMVNDSVISFIQQDTLLAKKVIEKDDTVDELYHQLERE |
6 | 2pffA | 0.21 | 0.20 | 6.50 | 0.67 | HHsearch-2 | | GAG-KGSIGQGLLQGGAALIEFLGWDLDAIIPFAEQGLHIDSKSEFAHRIMLTNILQKSGIETRPQVILPMSPNHGTFGGWHSESWANQLTVCGATRGTANNIIA---EGIEKMGVRTFNLLGLLTPEVVELCQKLQFVPELKEFTAKLRKESEVRKAVSIELEYAPRANIQLDFAELEGL |
7 | 4uosA | 0.14 | 0.13 | 4.53 | 0.99 | Neff-PPAS | | --------NEEVKKMLEKMIEEIKKMLEKAIKKVKEMLE-KMIKEIKKMLENGEDSEKILKKAKEMAEKILKMVIELAEKILKKAKEMAEKILKKVKELGEKMIEEIKKMLEKAIKKVKEMLEKMIKEIKKMLENGEDSEKILKKAKEMAEKILKMVIELAEILKKAKEMAEKILKKVKEL |
8 | 4hm9A | 0.15 | 0.13 | 4.44 | 0.56 | HHsearch | | REKKISSSALKVLDHAMIGPHKVILGLRTIFPLFMKSPRGTTEKEHEEHVCSILASL-------L----RNLR--G---------QQRTRLLNKFTENDSLRRLDAGLFVLQHICYIMAEICNANVPQIRQRVHILNRGSSIKIVRHIIKEYAENIGDGRPEFRENEQKRILGLLENF--- |
9 | 5cwjA | 0.17 | 0.14 | 4.72 | 0.65 | SP3 | | ------------------DSEEEQERIRRILKEARKS-G--TEESLRQAIEDVAQLAKKSQDSEVLEEAIRVILRIAKESGSEEA---LRQAIRAVAEIAKE--AQDSEVLEEAIRVILRIAKESGSAIRAVAEIAKEAQD-PRVLEEAIRVIRQIAEESGSEEARRQAEEEEIRRRAQ-- |
10 | 4uosA | 0.14 | 0.13 | 4.36 | 0.71 | PROSPECTOR2 | | G------DNEEVKKMLEKMIEEIKKMLEKAIKKVKEML-----EKMIKEIKKMLENGEDSEKILKKAKEMAEKILKMVIELAEKILKKAKEMAEKILKKVKELGVDNEEVKKML-EKMIEEIKKMLEKAIKKKKMLENGEDSEKILKKAKEMAEKILKMVIELAEKILKKAKEMVKELGVG |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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