Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240 260
| | | | | | | | | | | | | |
| Seq | LQIWKNKDYGSTRSIVRIIGKILPLDPCPRPNFELIPLLNSVDSGNCGYVVPSFADILCVANDEEASYLRFRNGIWKNEEEEKSEFFNPLQLVWDPLSPAVKHNKPLKNDPPVSEAAIKKIAALEDELTFLRSQIAAIVKMQELKNSINSASFDLNNEPSGLGPMPSSGTAQLSVEQDPFSSSVLPCPPPPPPLPPQVSSLQPPCSPLIQPGSNNICDSDNSATEMRKQHPGASKANYSRHSKNQKNKDVPNMLDVLKDMNKIKLR |
1 | 5yfpC2 | 0.10 | 0.09 | 3.18 | 1.16 | SPARKS-K | | ------------------TSSIYDRIYNFVALMEHIERLLVAELAEDALETPHLLEIHFLLTSARDFQEQVVVMAKEATEDAQRTV---MKLFSRLSGII-----------SKFDKLLDGLTYDIVEMALA-IRLFKIYDLEEREDLRIEAIRNIIK-------KKEIEIEKSSIKKLPNSKNTARLQDETPKVIEYPTNKGLYQEIMSGTISTRTAPRGYKHFLINGINNSISEMEMREKYVGDQKFDVLNMDWIFNELIIVKEH |
2 | 2bsgA | 0.10 | 0.10 | 3.63 | 1.36 | Neff-PPAS | | LKTSLETANSDIKTIQINKKDISDLKTLTSEHTEILNGTNNTVDSILADIIRN--DLLWIKRELMKHRIINNTDVITSQGIRLSLTIEVGNLREEEIDTKQTTVESDISAIKTSISIITSVNTNTDNIASINLEIKQRLTVIETSIIKGQIKDNTTSILRALNNAVQNLQVEIGNNSAGIKGQVVALNTLVNGTNPNGSTVEERGLTNSIKANETNIASVTQEVNTAKGNISSLQGDVQALQEAGYIPEAPRQAYVRKDGEWVFLS |
3 | 4k0mC | 0.08 | 0.06 | 2.24 | 1.02 | PROSPECTOR2 | | ------KVYTI-----DEAARTAKFDETVEVHAKLGIDPRRSDQNVRGTV-----------SLPHGLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQAAAAAAAAAAAAAA---------------------------------AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-------AAAAAAAAAAAAAAAAAAAAAAA-------------- |
4 | 4btgA | 0.11 | 0.11 | 4.03 | 1.06 | SPARKS-K | | NRAIKADAVGPPTAILEQLRT---LAPSEHELFHHIHVLSPLGFILRVGRTATYPNFALVDCVRASDLRRMLTALSSVD-SKMLQATFKAKGALAPALAATTAFERSRGNFDANAVVSSVLTILGRLWDQLRSNLALFIAYQDMVKQRGRAEVIFSDEPFKLRPINTTSYIGQTSAIDHMGQPSHVAKEITAFTPVKLANNSNQRFLDVEPATLAPIGNTFAVSAFVKNRTAVYEAVSQRTVNSNGAEGFPSVVERDYALDRDPMV |
5 | 3tvsA1 | 0.12 | 0.09 | 3.07 | 0.59 | FFAS-3D | | --------------------------------------------------------VIWFRHG-----LRLHDN----------PALLAALADKDQGIALIPVDGESAGTKNVGYNLLDSLQDIDDQLQAAAYIFRRLHEWNERDESIRSLCRELNIDFVEKVTADARLEDATFVELDPEFCRSLKLFEQLPTPEHFNVYGDNMGFLAKINWRGGETQALLLLDERLKVERGFYLPNQALPNIHDSPKSMSSVRRFYWSVHDLFKN |
6 | 4rwtD | 0.14 | 0.10 | 3.34 | 0.40 | HHpred | | --LNNIENITT--QTLTRFAEALKDNTVVK-T--FSLANTHADDEITGKGILAIMRALQH--NTVLTELRFHNQ--RHIMGSQEMEIV-KLLKENTTLLRLGY-------HFELPGPR---MSMTSILTRNM-DKQRQKRLQEQKQQEGYD-------------------PP-----P-------PPP-P-PLPEKKLI--------------------TRNIAEVIKQQESAQRALQGQGSGSGGSVGSQPN-SILKEIKNLR-- |
7 | 6d4hA | 0.10 | 0.10 | 3.73 | 0.87 | MUSTER | | EELWVEVG-GRVSRELNYTRQKIEEAMFNPQLMIQTPKEEGANVLTTEALLQHLDSALQASRVHVYMYNRQWKYKSGELITETGYMDQIIEYLYPCLIITPLDCFWEGAKLQSGTAYLLGKPPLRLEFLEELKKINYQVDSWEEMLNKAEVGHGYMDRPCLNPADPCPATAPNKNSTKPLDMALVLNGGCHGLSRKYMHWQEELIVGGTVKNSTGKLVSAHALQ-MTPKQMYEHFKGYEYVSHINWNEDKAAYVEVVHQSVASTQK |
8 | 1m2vB | 0.10 | 0.03 | 1.11 | 0.43 | CNFpred | | -----------------------------YCYVQVAVLLSLNN---SQRRIRIITLAMPTTESLAEVYASADQLA-----------------------------------SFYNSKAVEKALSLDDARVLINKSVQDILATYKKEIV----------------------------------------------------------------------------------------------------------------------- |
9 | 2vkyB2 | 0.13 | 0.02 | 0.78 | 0.48 | HHsearch-2 | | -----------------------------------------------------------LK-Y--DPDQYSIEADK--K------------FKL--------------IKQIEDEEILSKIYHIENEIARIKKLIG---------------------------------------------------------------------------------------------------------------------------------- |
10 | 2tmaA | 0.09 | 0.08 | 3.01 | 1.33 | Neff-PPAS | | -----------------------------KKKMQMLKLDKENALDRAEQAEADKKA----AEDRSKQLEDELVSLQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDLKEAETR |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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