>PF05308 (266 residues) LQIWKNKDYGSTRSIVRIIGKILPLDPCPRPNFELIPLLNSVDSGNCGYVVPSFADILCV ANDEEASYLRFRNGIWKNEEEEKSEFFNPLQLVWDPLSPAVKHNKPLKNDPPVSEAAIKK IAALEDELTFLRSQIAAIVKMQELKNSINSASFDLNNEPSGLGPMPSSGTAQLSVEQDPF SSSVLPCPPPPPPLPPQVSSLQPPCSPLIQPGSNNICDSDNSATEMRKQHPGASKANYSR HSKNQKNKDVPNMLDVLKDMNKIKLR |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 | | | | | | | | | | | | | | |||||||||||||
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Seq | LQIWKNKDYGSTRSIVRIIGKILPLDPCPRPNFELIPLLNSVDSGNCGYVVPSFADILCVANDEEASYLRFRNGIWKNEEEEKSEFFNPLQLVWDPLSPAVKHNKPLKNDPPVSEAAIKKIAALEDELTFLRSQIAAIVKMQELKNSINSASFDLNNEPSGLGPMPSSGTAQLSVEQDPFSSSVLPCPPPPPPLPPQVSSLQPPCSPLIQPGSNNICDSDNSATEMRKQHPGASKANYSRHSKNQKNKDVPNMLDVLKDMNKIKLR | |||||||||||||||||||
1 | 5yfpC2 | 0.10 | 0.09 | 3.18 | 1.16 | SPARKS-K | ------------------TSSIYDRIYNFVALMEHIERLLVAELAEDALETPHLLEIHFLLTSARDFQEQVVVMAKEATEDAQRTV---MKLFSRLSGII-----------SKFDKLLDGLTYDIVEMALA-IRLFKIYDLEEREDLRIEAIRNIIK-------KKEIEIEKSSIKKLPNSKNTARLQDETPKVIEYPTNKGLYQEIMSGTISTRTAPRGYKHFLINGINNSISEMEMREKYVGDQKFDVLNMDWIFNELIIVKEH | |||||||||||||
2 | 2bsgA | 0.10 | 0.10 | 3.63 | 1.36 | Neff-PPAS | LKTSLETANSDIKTIQINKKDISDLKTLTSEHTEILNGTNNTVDSILADIIRN--DLLWIKRELMKHRIINNTDVITSQGIRLSLTIEVGNLREEEIDTKQTTVESDISAIKTSISIITSVNTNTDNIASINLEIKQRLTVIETSIIKGQIKDNTTSILRALNNAVQNLQVEIGNNSAGIKGQVVALNTLVNGTNPNGSTVEERGLTNSIKANETNIASVTQEVNTAKGNISSLQGDVQALQEAGYIPEAPRQAYVRKDGEWVFLS | |||||||||||||
3 | 4k0mC | 0.08 | 0.06 | 2.24 | 1.02 | PROSPECTOR2 | ------KVYTI-----DEAARTAKFDETVEVHAKLGIDPRRSDQNVRGTV-----------SLPHGLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQAAAAAAAAAAAAAA---------------------------------AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-------AAAAAAAAAAAAAAAAAAAAAAA-------------- | |||||||||||||
4 | 4btgA | 0.11 | 0.11 | 4.03 | 1.06 | SPARKS-K | NRAIKADAVGPPTAILEQLRT---LAPSEHELFHHIHVLSPLGFILRVGRTATYPNFALVDCVRASDLRRMLTALSSVD-SKMLQATFKAKGALAPALAATTAFERSRGNFDANAVVSSVLTILGRLWDQLRSNLALFIAYQDMVKQRGRAEVIFSDEPFKLRPINTTSYIGQTSAIDHMGQPSHVAKEITAFTPVKLANNSNQRFLDVEPATLAPIGNTFAVSAFVKNRTAVYEAVSQRTVNSNGAEGFPSVVERDYALDRDPMV | |||||||||||||
5 | 3tvsA1 | 0.12 | 0.09 | 3.07 | 0.59 | FFAS-3D | --------------------------------------------------------VIWFRHG-----LRLHDN----------PALLAALADKDQGIALIPVDGESAGTKNVGYNLLDSLQDIDDQLQAAAYIFRRLHEWNERDESIRSLCRELNIDFVEKVTADARLEDATFVELDPEFCRSLKLFEQLPTPEHFNVYGDNMGFLAKINWRGGETQALLLLDERLKVERGFYLPNQALPNIHDSPKSMSSVRRFYWSVHDLFKN | |||||||||||||
6 | 4rwtD | 0.14 | 0.10 | 3.34 | 0.40 | HHpred | --LNNIENITT--QTLTRFAEALKDNTVVK-T--FSLANTHADDEITGKGILAIMRALQH--NTVLTELRFHNQ--RHIMGSQEMEIV-KLLKENTTLLRLGY-------HFELPGPR---MSMTSILTRNM-DKQRQKRLQEQKQQEGYD-------------------PP-----P-------PPP-P-PLPEKKLI--------------------TRNIAEVIKQQESAQRALQGQGSGSGGSVGSQPN-SILKEIKNLR-- | |||||||||||||
7 | 6d4hA | 0.10 | 0.10 | 3.73 | 0.87 | MUSTER | EELWVEVG-GRVSRELNYTRQKIEEAMFNPQLMIQTPKEEGANVLTTEALLQHLDSALQASRVHVYMYNRQWKYKSGELITETGYMDQIIEYLYPCLIITPLDCFWEGAKLQSGTAYLLGKPPLRLEFLEELKKINYQVDSWEEMLNKAEVGHGYMDRPCLNPADPCPATAPNKNSTKPLDMALVLNGGCHGLSRKYMHWQEELIVGGTVKNSTGKLVSAHALQ-MTPKQMYEHFKGYEYVSHINWNEDKAAYVEVVHQSVASTQK | |||||||||||||
8 | 1m2vB | 0.10 | 0.03 | 1.11 | 0.43 | CNFpred | -----------------------------YCYVQVAVLLSLNN---SQRRIRIITLAMPTTESLAEVYASADQLA-----------------------------------SFYNSKAVEKALSLDDARVLINKSVQDILATYKKEIV----------------------------------------------------------------------------------------------------------------------- | |||||||||||||
9 | 2vkyB2 | 0.13 | 0.02 | 0.78 | 0.48 | HHsearch-2 | -----------------------------------------------------------LK-Y--DPDQYSIEADK--K------------FKL--------------IKQIEDEEILSKIYHIENEIARIKKLIG---------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
10 | 2tmaA | 0.09 | 0.08 | 3.01 | 1.33 | Neff-PPAS | -----------------------------KKKMQMLKLDKENALDRAEQAEADKKA----AEDRSKQLEDELVSLQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDLKEAETR | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |