Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180
| | | | | | | | | |
| Seq | QSSDSVELNETKQLNVKLNNGRVANLRIAHGDNKLSQVYIAEKPLSIDDIVKEGSNKVGTNSVFLGTVYDYGIKSPNAASTSSNVTMTRGAANFDIKEFKSMFIVFKGVTPTKTVEDNGMLRFEVDNMIVCLIDPNTAPLSEREVRELRKSNCTLVYTRNAAAQQILLENNFTVINAEQTAYLKNYKSYR |
1 | 1ddtA2 | 0.13 | 0.10 | 3.45 | 0.55 | SPARKS-K | | SPGHKTQPFLHDGYAVSWNTVEDSIIRTGFQGESGHDIKITAE-----------NTPLPIAGVLLPTIP----------------------GKLDVNKSKT-HISVNGMRCRAIDGDVTFCRPVGNGLHVAFHRSSSEKIHSNEI----SSDSIGVLGYQKTV-------DHTKVNSKLSLFFEIKS--- |
2 | 4rthA | 0.13 | 0.11 | 3.64 | 0.44 | FFAS-3D | | -VGDGFKLLPSKWNPSKEREFPGQVLRYEDNFDANSNVSVIIQPTSKKAITEYGSPE-EFLSQVDYLLGKQAYGGKTDETDAVATANVLESSTPVVKQYYSITVLTRTADGDEGGKHQLITATVSDGKLYICKDKRWFKGARKGVEKAAASFSV------------------------------------ |
3 | 3rpfA | 0.13 | 0.08 | 2.91 | 0.39 | HHpred | | -----------------------------------AVLKIIQGALDTRELLKACAKNFGAFCVFVGIVRKEDN-----------IQGLSFDIYLLKTWFEKWHHKDLGV---VLK-AHSLGDVLIGQSSFLCV-SGKNRLYENFIEDFKHNAPI---------------WKYDLI-HNKRIYAKERS--- |
4 | 3jc8Qa | 0.12 | 0.11 | 3.75 | 0.59 | MUSTER | | SGPERLVVDATGIKGHHEGSGPVSGVVASQFSDQVGRVLLA-KASQY-DVRADGN-------RVVISVDGTSQSVDDTLSIRADGDIARYEV-LELADPPRLAVDLFGVGPRVKSGALRDVRVGAHADKVRLVLDVRGTMKDVRFEESSSGGRIVMKLSGTSG-------WKVDRPDPRSAVLTLDNARL |
5 | 2iapA | 0.11 | 0.07 | 2.69 | 0.87 | CNFpred | | ------CFTTDGQMIQVDTAFFPNGIAVRHMNGRPYQLIVAETP---------------TKKLWSYDIKGPA-----------KIENKKVWGHIPGT-HEGGADGMDF------DEDNNLLVANWGSSHIEVFGPDGGQPKMRIR--CPFEKPSNLHFKP----------------QTKTIFVTEHENNA |
6 | 4yw0A2 | 0.15 | 0.02 | 0.53 | 0.31 | HHsearch-2 | | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------GYKQIDGNYYLKLRGDTDYN |
7 | 4hxeB1 | 0.06 | 0.06 | 2.47 | 0.67 | Neff-PPAS | | ---SMPRISPDGK-KIAFMRFNTAQIWVADLKTLSAKKVLEAKNIRSIEWNQDS------RRLLAVGFKRREDEDFIFEDDVPAWFDNMGFFDGEKTTFWVIDTEGEEVIEQFEKPRFSSGIWHGDSIVVSVPHRDVIPRYF--------KYWDIYLWKDGEEEKLFEKVSFYAIDSDGELLYGKPEKKY |
8 | 2x7bA2 | 0.20 | 0.04 | 1.18 | 0.23 | HHsearch | | ---------------------------------------------------------------------------------------------------------------------------------------------------------LEVRVSNYPAIALYEKLNFKKVKVLKG-YYADGDAY- |
9 | 2edmA | 0.11 | 0.09 | 3.39 | 0.54 | SP3 | | --SVVANYDQMMRVPIQRRAKVMSIRGERSYNTPLGKVAMKNG-LSDKDMKD-----VSADLVISTVTAPRTDPAGTGAENSNMTLKNNTGVDLLINDITVRPTVIAG----NIKGNTMSNTYFSSK----DIKSSSSKITLIDV--------CSKFEDGAAFEATMN----IGFTSKNVIDIKDEI--- |
10 | 4lmhA2 | 0.10 | 0.09 | 3.35 | 0.69 | PROSPECTOR2 | | SSTDNATKPYGGTGSAAKLGYKAKFSNIGIKNNALTQILDNKDQPIGKEFISDPSAYTKSSIYFSWGIDKDYPAYTAGSRYSDRGFALSNSKVSTYNEATKTFTIDSTNSNLKLPADLTGMNVELYAGVATCFNKGGYGVEDVVATP-CSTDTRYAYIQD----------QPFRFKWNGTD-TNSAAEKR |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|