>PF05113 (311 residues) MLLLQYDFKIEFYNVDTSKKSPDGIPFAEEIPKIIINTQDGIHIDISISNVYSNIHTISS KQAKVVLWNLPLDFTDDIKFGDIVKIYYKKFAHEKNFDFIMAGTLGPPMSTDYPGGDFSV DLDVRLLTKSNFFNRKLAGKEGKNFKGKTVQEAIESVFPNRNILNMDEKDCLKIIDKDIY ATTPKEFIDKIKGTYVHNVIADIGTGLRGYECYLIFTNYIKKGENVHYEALEDYGLEFIP QQEITLGTTLKKNLIFWNAKTFFTHKLNVGDKVSFIDGLGKMIKTTIKETSARLSNTGEC SLILKLDDDSN |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 | | | | | | | | | | | | | | | | |||||||||||||
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Seq | MLLLQYDFKIEFYNVDTSKKSPDGIPFAEEIPKIIINTQDGIHIDISISNVYSNIHTISSKQAKVVLWNLPLDFTDDIKFGDIVKIYYKKFAHEKNFDFIMAGTLGPPMSTDYPGGDFSVDLDVRLLTKSNFFNRKLAGKEGKNFKGKTVQEAIESVFPNRNILNMDEKDCLKIIDKDIYATTPKEFIDKIKGTYVHNVIADIGTGLRGYECYLIFTNYIKKGENVHYEALEDYGLEFIPQQEITLGTTLKKNLIFWNAKTFFTHKLNVGDKVSFIDGLGKMIKTTIKETSARLSNTGECSLILKLDDDSN | |||||||||||||||||||
1 | 2z6bD | 0.13 | 0.12 | 4.02 | 0.84 | SPARKS-K | QRPGYPNLSVKLFDSYDSNNRFV--ELAAT------------ITTLTMRDSLYGRN-----EGMLQFYDSK-NIHTKMDGNEIIQISVANANDINNVKTRIYGCKHFSVSVD-SKGDNIIAIELGTIHSIE--NLKF----GRPFFPESIKEMLGVIYQDRTLLTPAINAINAYVPDIPWTSTFENYLSYVRSDKFVFVWQDI----MGVNMMDYPMIVGEPSQELKYPLAYDFVWLTIYAHSFLDSSIPMITTGYAKCSTIGNFNLTPGVKIIFNDSKNQKTEFYVDEVIHELSNN-NSVTHLYMFTNAT | |||||||||||||
2 | 3cddD1 | 0.15 | 0.12 | 3.90 | 0.63 | FFAS-3D | --------------------------------EIVLKA-GGKIYKIGITRSLEASGAFDLETY-KFNDAQYKAFIEPIKQGQACTVDI-------GGERVITGYV-DDWVPSYDESTITISVSGR--DKTADLVDCSIDYPSGQFNNQTLTQIADIVCKPFGIKVIVNTDVGEPFQRIQQGETPHELLARLAKQRGVLLTSD-------TFGNLVITRASKTKAGV----------------SLILGDNVKAARGAEYTVTGWRIPQNINTLVPVIDEIGLD-EELIASILFSEDDAGR-LAVISVVRPD- | |||||||||||||
3 | 3cddD1 | 0.14 | 0.11 | 3.82 | 0.45 | HHpred | ------------------------------SEEIVLKA-GGKITKIGITRSLEA-----SGAFDLETYKFNDAFIEPIKQGQACTVDIG-------GERVITGYVDDW-VPSYDEST--ITISVSGRDKTADLVDCSIDYPSGQFNNQTLTQIADIVCKPFGIVIVNTD-VGEPFQRIEQGETPHELLARLAKQRGVLLTSDTG--------NLVITRASK-TKA-G------VSLIL-GDNVKAAR-GAEYTVTGWRIP-QTGKLWNINTLVPVIDEIGLDEE-LIASILFSEDDAGLAVISVVRPDA-- | |||||||||||||
4 | 3btaA | 0.14 | 0.14 | 4.62 | 0.67 | MUSTER | ILNLRYE-HLIDLSRYASKINIGSKNFDPDKNQIQLFNLESSKIEVILKNAIVYNSMYENFSTSFWIRI-PKYFNSIMENNSGWKVSLNYWTTQEIKQRVVFKYSQMINISDYINRWIFVTITNNRLNNSKYINGRLIDKPISNLGNIHASNNIMFKLDGCRYIWI---KYFNLFDKEL---NEKEIKDLYDNQSNSGILKDFWGDYLQYDKPYYMLNLYDPNKYVDVNNVGIRGYMYL-PRGSVMTTNIYLNSSLYRGTKFIIKKYASGNKDNIVRNNDRVYINVVVKEYRLATNAVEKILSALEIPDVG | |||||||||||||
5 | 3lx1A | 0.09 | 0.06 | 2.42 | 0.99 | CNFpred | ------EAAFKFTEE---------------GISMRAMDPRVVLIDLNLPESI--SKYEVEEPETIGINMDQFKILKRGKAKDTLILRKGD-----ENFLEITFEG-----------TAKRTFRLPLID-VEELELEL------------------PELPFTAKVVLLG-------------EVLKEGIKDAS-LVSDAIKFIAK------ENEFTMKAEGE--TNEVEIRLTLE----EGLLDLEVE---EETKSAYGIRYLSVKGIGKADEVILRFGNEMPLQMEYMIR-------DEGRLTFLLAP--- | |||||||||||||
6 | 3cddD1 | 0.15 | 0.12 | 3.90 | 0.55 | HHsearch-2 | ------------------------------SEEIVLKA-GGKIYKIGITRSLEA-----SGAFDLETYKFNDAFIEPIKQGQACTVDIG-------GERVITGYVDDW-VPSYDEST--ITISVSGRDKTADLVDCSIDYPSGQFNNQTLTQIADIVCKPFGIVIVNT-DVGEPFQRIEQGETPHELLARLAKQRGVLLTSDTG--------NLVITRASK-TKAG-------VSLILGNVKAAR---GAEYTVTGWRIP-QTGKLWNINTLVPVIDEIGLDEE-LIASILFSEDDAGLAVISVVRPDAD- | |||||||||||||
7 | 3cddD1 | 0.13 | 0.11 | 3.66 | 0.82 | Neff-PPAS | -----------------------------EEIVLKAGGKIYQGWKIGITRSLEA-----SGAFDLETYKFNDAFIEPIKQGQACTVDIG-------GERVITGYVDDWVPSYDEST---ITISVSGRDKTADLVDCSIDYPSGQFNNQTLTQIADIVCKPFGIKVIVNTDVGEPFQRIQIEQTPHELLARLAKQRGVLLTSDTFG-------NLVITRASKTKAG----------VSLILGDNVKAARGAEYTVTGWRIP-QTGKLWNINTLVPVIDEIG-LDEELIASILFSEDDAGLAVISVVRPDAD- | |||||||||||||
8 | 3cddD1 | 0.14 | 0.11 | 3.82 | 0.56 | HHsearch | ------------------------------SEEIVLKA-GGKITKIGITRSLEA-----SGAFDLETYKFNDAFIEPIKQGQACTVDIG-------GERVITGYVDDW-VPSYDEST--ITISVSGRDKTADLVDCSIDYPSGQFNNQTLTQIADIVCKPFGIVIVNTD-VGEPFQRIEQGETPHELLARLAKQRGVLLTSDTG--------NLVITRASK-TKA-G------VSLIL-GDNVKAAR-GAEYTVTGWRIP-QTGKLWNINTLVPVIDEIGLDEE-LIASILFSEDDAGLAVISVVRPDAD- | |||||||||||||
9 | 3cddD1 | 0.14 | 0.11 | 3.82 | 0.90 | SP3 | ------------------------------SEEIVLKA-GGKIYKIGITRSLEASG-----AFDLETYKFNDAFIEPIKQGQACTVDIG-------GERVITGYVDD-WVPSYDEST--ITISVSGRDKTADLVDCSIDYPSGQFNNQTLTQIADIVCKPFGIVIVNTDVGEPF--QRIQGETPHELLARLAKQRGVLLTSDTFG-------NLVITRASKTKAGV----------SLILGDNVKAARGAEYTVTGWRIPQT-GKLWNINTLVPVIDEIG-LDEELIASILFSEDDAGLAVISVVRPDAD- | |||||||||||||
10 | 5ay6A | 0.11 | 0.09 | 3.41 | 0.96 | PROSPECTOR2 | KTT---RVGVNANLRSEQPVAAAVVGTAGSPSKTNVVDSATNSHNYDVVYSSTGIANPVSGNNEYLVD---------IKENGVIVATGKVAYDAATNELVSSTIDYKGASPVTGSMT-----TTRINAAGTTVNLADLGIVNASGADDAEVVAGKLYDPSTWSMSDYAKDNSKGVKPDFEVQIPL----SDSKGGQRTVTLSMLKGPGPNQWYAELRAKPGDLANNGNGQISTGIIEFTTDGKLKNTGSL--------------FGTTSPTAITIKSSGYIAPTVTPPAVQPPTPGIDEQEVQIDLASAAN | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |