>PF05097 (418 residues) MAERKLNLEAPLLSTRRMQKTSAVSVRRNKTFDFTHDDTSSVPVLVPDMGLDHFTESASV PFTWEQAPGKLKGNDSTTPQEVFTPCLPPGKAIDRNLSSKTKQVDEEEESEDVFSDARDT LSPKDSFSVKNSISGVSGYGVVTEMKKTLNPCEDPQSRDFMLNRFLPAAKAMTVEQSHYA LNRKPSSCMSEPTLQIRELVPEEKRQTSKRYDESLVLPCYDHQYIDDEESEEGDGEVSEY AYLPRRGCGMLPQLCFKESLGMLNTVPGFKTKHKSFPSHDQAKSSKVSQLKSRFQSVKKL ALVSVSKQKLSGKVQSPVHPSMGKKFNSETNLTCSASRSSSPYRHPRCMSPFRTASNSSP FHSTCFHDTRKETENLRANRLNKHIRNISSSQELLYSKDNGSTSSLSEKIVYVETNIS |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | MAERKLNLEAPLLSTRRMQKTSAVSVRRNKTFDFTHDDTSSVPVLVPDMGLDHFTESASVPFTWEQAPGKLKGNDSTTPQEVFTPCLPPGKAIDRNLSSKTKQVDEEEESEDVFSDARDTLSPKDSFSVKNSISGVSGYGVVTEMKKTLNPCEDPQSRDFMLNRFLPAAKAMTVEQSHYALNRKPSSCMSEPTLQIRELVPEEKRQTSKRYDESLVLPCYDHQYIDDEESEEGDGEVSEYAYLPRRGCGMLPQLCFKESLGMLNTVPGFKTKHKSFPSHDQAKSSKVSQLKSRFQSVKKLALVSVSKQKLSGKVQSPVHPSMGKKFNSETNLTCSASRSSSPYRHPRCMSPFRTASNSSPFHSTCFHDTRKETENLRANRLNKHIRNISSSQELLYSKDNGSTSSLSEKIVYVETNIS | |||||||||||||||||||
1 | 4btgA | 0.12 | 0.11 | 3.72 | 1.62 | SPARKS-K | LKVKDLNGSARGL-TQAFAIGELKNQLSVGALQLPLQFTRTFSASMTSELLWEVGKGNIDPFQYAQAGGALSCNPEIWRKLTAYITGSSNRAI--------KADAVGKVPPTAILEQLRTLAPSEHELFHFVCHVLS----PLGFILPDAAYVYRVGRTATYPNFVDCVRASDLR------------------RMLTALSSVDSKMLQATFKKGALAPALISQNAATTAFERSRGNFD-------------ANAVVSSVLTILGRLWSPST------PKELDPSARLRNTNGIDQRSNLALFIAYQDMVKQRGRAEVIFSD--EELSSTIPWFIEAMSEVSPFKLRPGQPSHFAKEITAFTPVKRFLDVEPGISDRMSATLAPIGNTFAVVKNRTASQRGTVNSNGAEMTLGFPSVVE | |||||||||||||
2 | 1zvoC | 0.10 | 0.09 | 3.48 | 1.10 | MUSTER | KPSETLSLGPIRRTGYYWGRQPPGKGLEWIGGVYYTGSIYYNPSLRGRVTISVDTSRNQFSLNLRSM--SAADTGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAPTKADVFPIISGCRHPKDNSPVVLACLITGYHPTSVTTQSQPQRTFPEIQRRDSYYMTSSQPLQQWVVQHTASKSKKEIFRWPESPKAQASSVPTAQPQAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPEC--------------PSHTQPLGVYLLTPAVQDLWLRDKATFVVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNHPSLPPQRLMALREPAAQAPVKLSLNLLASSDPPEAEVSGFSPPNINTSGFAPARPPPQPGSTTFWAWSVLRVPAPPS | |||||||||||||
3 | 2bsgA | 0.07 | 0.06 | 2.53 | 2.75 | Neff-PPAS | IVLNDLPFAEGQSRISWIKNGEEILGADTQYGSEGSMNRPTVSVLRNVEVLDKNIGILKTSLE-TANSDIKTIQINKKDISDLKTLTSEHTEILNGTNNTVDSILADIIRNDLLWIKREL--------MKHRIINNTDVITSQGIRLSLTIEVGNLREEL--------------VYSRLNEIDTKQTTVESDISAIKTSISIITSVNTNTDNIASINLEIKQRLTVIETSIIKGQIKDNTTSILRANVSW-----LNQIVSLLNRVSTIETSVSGLNNAVQNLQVEIGNNSA---------------------GIKGQVVALNTLVNGTNPNGSTVEERGLTNSIKANETNIASVTQEVNTAKGNISSLQGDVQALQEAGYIPEAP--RDGQAYVRKDGEWVFLSTFL---------- | |||||||||||||
4 | 2nbiA | 0.08 | 0.07 | 2.89 | 1.80 | PROSPECTOR2 | QPSDLNPSSQPYSDASRPPSCLSFGRPDCDVLPTPQNINCPRCCATECRPDNPMFTPSPDGSPPICSPTMLPTNQPTPPEPSSAPSDCGEVIEECPLDTCFLPTSDPARPPDCTADCDVLPFPNNLGCPACCPFECSPDNPMFTPSPDGSPPNCSPTML-----------------PTPQPSTPTVITSPAPSSQPSQCAEVIEQCPIDECFLPYGDSSRPLDCTDPAVNRPDCDVLPTPQNINCPACCAFE---CRPDNPMFTPSPDGSPPICSPT--MMPSPEPSSQPSDCGEVIEECPIDACFSPSPSAVTVPLTPAPSSAPTRQPSSQPTGPQPSSQPSECADVLELCPYDTCFLPFDDSSRPPDCTDPSVNRPDCDKLSTAIDFTCPTCCPTQSPDGSPPVCSPTMMPSSPTE | |||||||||||||
5 | 2pffB | 0.14 | 0.12 | 4.06 | 0.23 | HHWb | -----------------------------MDAY----STRPLTLSHGS--LEHVLVPTASFFIASQLQEQ---FNKILPEPTEGFAADDGKFLGYVSSEPSKCLTEFENCYLEGNDIHA-LAAKLDTTLVKTKELIKNYITIMAKRP---F-----DKKSNSALFR----AVGEGNAQLVFGGQGNDY-FEELRDLYHVLVGDLIATLSELIRLDAEKVFTQNILWLEPSNTPDKDYLLS---IPISCPLIQLAHYVVTAKLLGFTPGEKGATGHSSFVSVRKAIEAYPNTSLP--------PSILEDSLENGVPSPML-S-ISNLTNKTNSHL---PAGKQVEISKAKAPSGLDQSRIPFSENRFLPVASPFHSLLVPASDLINKDSFNAKDIQIPVGSDVLSSISERI--VDCIIR | |||||||||||||
6 | 3j3iA | 0.08 | 0.07 | 2.95 | 1.55 | SPARKS-K | TPRSRTAHRVDMVRECDFNPTMNLKAAGPKARSGVKSRRRVSEVPLAHVFRSPPRRESTTTWLTREGPQLTRRVPIIDEPPAYESGRSSSPVTSSISEGTSQHEEEMGLFDAEELPMQQTVIATEARRRLGRGTLERIQEAAAQGEVTAEKNRRIEA--------MLSARDPQFTGREQITKMLSDGG--LGVREREEWLELVDKTVGVKGLKEVRSIDGIRR-HLEEYGEREGFAVVRT-LLSGKHVRRINQLIRESNPSAFETEASRMRRLRADWDGDAGSAPFVGNSPGWKRWLENNNIPSDIQVAGKKCSYLAEVLSHGNLKLSDATKLGRLVEGTS----LDLFPPQLSSEEFSTC----SEATLAWRNAPSSLGVRPFAQEDSRWLVMAATCGGGSFGIGKLKSLCKEFSVP | |||||||||||||
7 | 5kcs1w | 0.08 | 0.08 | 3.25 | 0.58 | FFAS-3D | MKIINIGVLAHLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGNTKVNIIDTPGHMDFLAEVYRSSVLDGAILLISAKDGVQAQTRILFHALRKMGNKIDQNGIDLSTVYQDIKEKLSAE---IVIKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNKFYSSTHRGPSEVLHLRDSVRVSEKEKIKVTESINGELCKIDRAYSGEIVILQNEFKIENPHPLLQTTVEPSKPEQREMDSTTHEIILSFLGKVQMEVISALLQEKHVEIEITEPTVEYTIHIEVPPNPFWASIGLSVSPLPLGSGMQ-YESSVSLGYLNQSFQNAVMEGIRYGCEQGLLYYSPVSTPLEQVLKKAGTELLEPYLSFKIYAPQE-- | |||||||||||||
8 | 2pffB | 0.14 | 0.12 | 4.06 | 0.23 | HHpred | -----------------------------MDAY----STRPLTLSHGS--LEHVLVPTASFFIASQLQEQ---FNKILPEPTEGFAADDGKFLGYVSSEPSKCLTEFENCYLEGNDIHA-LAAKLDTTLVKTKELIKNYITIMAKRP---F-----DKKSNSALFR----AVGEGNAQLVFGGQGNDY-FEELRDLYHVLVGDLIATLSELIRLDAEKVFTQNILWLEPSNTPDKDYLLS---IPISCPLIQLAHYVVTAKLLGFTPGEKGATGHSSFVSVRKAIEAYPNTSLP--------PSILEDSLENGVPSPML-S-ISNLTNKTNSHL---PAGKQVEISKAKAPSGLDQSRIPFSENRFLPVASPFHSLLVPASDLINKDSFNAKDIQIPVGSDVLSSISERI--VDCIIR | |||||||||||||
9 | 1zlgA | 0.11 | 0.10 | 3.65 | 1.05 | MUSTER | LQSGQLEVSIEPVIVQRRWNYGIHPSEDDATHWQTVAQTTDERVQLTDIRPSRWFTAPSKHFRSSKDPSAPRLANSTVNDLPEEPDIPWMVSSKSLVPTKKKRRKTTDGFQNSVI--LEKLQPDCDYVV--ELQAITYWGQTRLKSAKVSLHFTS-----------THATNNKEQLVKTRKGGIQTQLPFQRRRPTRPLEVGAPFYQDGQLQVKVYWKKTEDPTVNRRWFPEACAHNRTTGSEASSGMTHENYIILQD----LSFVQPIRPKSHSKAEAVFFTTPPCSALKGKSHKPIGC--LGEAGHVLSKVLAKPENLSASFIVQDVNITGHAKANLYQPMTGFQ----TWAEVTTESRQNSLPNSIISQSQILPSDHYVLTVPNLRPSTLVLTPGGEGPATIKTFRTPELPPSSA | |||||||||||||
10 | 2cqsA | 0.13 | 0.03 | 1.00 | 0.44 | CNFpred | -------------------------------------------------------------------------------------------VNKAPAHALLGRFATSEQVDAALEALNSYWTLLSTYSVSSTD----------------------EKLDRMVNIWNQYQCMVTFNMS---------------------------------------SASFFETG-------------------IGRGMGFRDSNQDLLGFVHLIPE-------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |