Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140
| | | | | | | |
| Seq | TTINLFTYKPPPNTVCDDDIDKQNFFIQGVLEALNDNSKSKQACFLELKREQCLLLRKIKHDLLYSCEGNYCQNHVLLDALHLYKLYKEEFDDTQSAFDIDLMQTCREIVYLTFELFSCAANIVVFVHASANYKDNVLAQLLVELQSKNFITL |
1 | 5cwfA | 0.15 | 0.14 | 4.84 | 0.75 | SPARKS-K | | MKKVMEALKKAVELAKKNNDDEVAREIEEIVEALRENNSEMAKVMLALAKAVLLAAKNVAREIARAAENN--SDEMAKVMLALAKAVLLAAKNNDDEVAREIARAAAEIVEALREMLELAKRVLDAAKNNDDETAREIARQAAEEVEAD---- |
2 | 4d10B1 | 0.18 | 0.13 | 4.26 | 0.71 | FFAS-3D | | ------------------KEDDPKAALSSFQKVLELEGEKGEWGFKALKQMIKINMMNRYKQLLTYIRSAVTRNYSILDYISFYETTLEALKDAKN--DRLWFKTNTKLGKLYLE----------------REEYGKLQKILRQLHQS----- |
3 | 5frpA | 0.16 | 0.12 | 4.15 | 0.36 | HHpred | | ----------------LDQDNTDLTGLDKYRDALVSKHKDVGCCLSDITDIFKLVLSQ-FEQLGDQENGYHIQQTYLITKLLEYRSIVLLADL----------PSSNNLLIELFHIFYDPNKILGISEFDSVPLEV-LRLIFNKFLTYNP--- |
4 | 5ipxA2 | 0.20 | 0.17 | 5.43 | 0.66 | MUSTER | | HLFNLFRYHYP---------SWDQIL--QELDTLSVATLNPDCHVPALNVEKTLYLAKTIQILVQHRQSEPKLVHIISTSLTLLKSTARSF---FAWYDLYRPNL-AALVKYTEHLIR---------ALTPDCSDVELGELCSHLHHCKHALF |
5 | 4l3tA | 0.09 | 0.08 | 2.96 | 0.59 | CNFpred | | VLFSSLCLDR-----------NLPDMMQLWSEIFNNPMFEEEEHFMVLVMMTAQ-GHLYASIRAGRTLTPAGDLQETFSGMDQVRLMMRIAEM---TDIMPILRMLPRIMKHLLNG----DNMRCSVNATPQQMPQTEMAVEDFLRSI----- |
6 | 2pffB | 0.19 | 0.18 | 5.71 | 0.77 | HHsearch-2 | | RPLTLSHGSLE--HVLLVP--TASFFIASQLEQFNKEPTEGFATPAELVGK---FLGYVSSLVEPSKVGQFDQVLNLCDIHALAAKLLQENDT-TLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGNGNTDD-YFEELRDLYQTYHVLV |
7 | 1eq1A | 0.13 | 0.12 | 4.30 | 0.57 | Neff-PPAS | | --------APAGGNAFEEMEKHAKEFQKTFSEQFNSNSKNTQDFNKALKDGSDSVLQQLSAFSSSLQGANGKAKEALEQARQNVEKTAEELRKAHPDVEKEANAFKDKLQAAVQTTVQESQKLAKEVASNMEETNKKLAPKIKQAYDDFVKHA |
8 | 4fgvA2 | 0.15 | 0.11 | 3.73 | 0.46 | HHsearch | | TPQQVHTYEAC-GYMQGNR-NQQERLLDEIPGILHEPD---------TIKIIGNIM-KT-NVSACSSIGPYFFPRLYNDMLQMYAATSQLISEGEIATKMPKVRGLRTIKKEILKLVETFVEK-----AE----------------------- |
9 | 1px5B | 0.09 | 0.08 | 3.23 | 0.69 | SP3 | | VEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSRGKEGEFRNRPTKLKSLIRLVKHWYQTCKKTHGNKLPP-QYALELLTVYAWEQGSRKTDFS---------TAQGFQTVLELVLKHQKLCIFWEAYYDFTNPVVGRCMLQQLKKPRPVI |
10 | 2pbrA | 0.12 | 0.12 | 4.15 | 0.60 | PROSPECTOR2 | | MLIAFEYLKQKGYFVSLYREPGGTKVGEVLREILLTEELDERTELLLFEASRSKLIEEKIIPDLKRDKRFVLSTIAYQDVEFIKNLNEFATRGVKPDIRFENKEFLEKVRKGFLELAKEEENVVVI--DASGEEEEVFKEILRALS--GVLRV |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|