Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140
| | | | | | | |
| Seq | LACMIATWAFGGGALPSWLGLSAQAFDELLALHFPGASISPPSTAAEADGERSLEFADLQKLMVENRANESLSEIWMADIVASACMGSDHLWQDLGLWSRGDLTALMQRNFPALAARNDRDMKWKKFLYKQLCETEGIYVCRSPSCEVCADYANCFG |
1 | 5cwjA | 0.10 | 0.09 | 3.29 | 0.77 | SPARKS-K | | IRRILKEARKSG---------TEESLRQAIEDVAQLAKKS----------QDSEVLEEAIRVILRIASGSEEALRQAIRAVAEIAKEAQVLEEAIRVSGSEEALRQAIRAVAEIAKEDPRVLEEAIRVIRQIAEESGSEEARRQAERAEEEIRRRAQ |
2 | 4uobA | 0.14 | 0.13 | 4.54 | 0.69 | FFAS-3D | | -EAALLDGPDGIEATLKSAGGGADYIYGILAHLQEHHGGLSLRFLREF-PHTPEGHEQARQALAALPGVGHKTVALVLLFDRPAMPVDGNMERRLELWNSHKVERWYAEVMP--------ADWETRFALHISGVRHGRDTCRSPLCPQCPLREFC-- |
3 | 2lmdA | 0.19 | 0.15 | 4.71 | 0.37 | HHpred | | ---------HHHSHMAMQEGLSPNHLKNMLKTYFSDVKFNRCITNGELSITRD---CELYRALNMHYNKAFEVPERF----------------------LEVAQITLREFFNAIIAGKDVDPSWKKAIYKVICKLDSEVPFKSPNCLQELLH----- |
4 | 2qibA2 | 0.12 | 0.11 | 3.81 | 0.74 | MUSTER | | --------EPRQGPLGARL--RVGRYFDFVDEH-GPGRGGPAVGSTTTNALVDSVRQAAYVQILSHLDVTPARLELVVRSWISLAESTALLWLDGRRIPRAELETQLVHDFAALAVSAAYD-------GALVRRVLADEPEDGPFGDLVDRLLALSA |
5 | 3n7qA | 0.13 | 0.10 | 3.34 | 0.63 | CNFpred | | NNLNLENNIK----FLYSVGLTRKCLCRLLTNAP--------RTFSNSLDLNKQMVEFLQAAGLSLGHN--DPADFVRKIIFKNPF-IEFLRSTFNLNS-EELLVLICGPGAEILDLSNDYARSYANIKEKLFSL---------------------- |
6 | 2abkA2 | 0.12 | 0.07 | 2.46 | 0.50 | HHsearch-2 | | --------------------------------------------------MNKAKRLEILTRLRENNPHPIAVDTHIFRVCNRTQFAPG--------KNVEQVEEKLLKVVPA--------EFKVDCHHWLI--LHGRYTCIAPRCGSCIIEDLCEY |
7 | 2qibA | 0.12 | 0.12 | 4.24 | 0.67 | Neff-PPAS | | SDDLADRFVEPRQGPLGARLLRVGRYFDFVDEHGPGFSALRGGGSTTTNALVDSVRQAAYVQILSHLDVTPARLELVVRSWISLAESTALLWLDGRRIPRAELETQLVHDFAALAVSAAYDEE--GALVRRVLADEPE---DGPFGDLVDRLLALSA |
8 | 2abkA2 | 0.12 | 0.07 | 2.45 | 0.58 | HHsearch | | --------------------------------------------------MNKAKRLEILTRLRENNPHPIAVDTHIFRVCNRTQFAPG--------KNVEQVEEKLLKVVPA--------EFKVDCHHWLI--LHGRYTCIAPRCGSCIIEDLCE- |
9 | 1mdmA | 0.09 | 0.06 | 2.20 | 0.75 | SP3 | | RQRIVELAHQGVRPISRQLRVSHGCVSKILGRYYTGSIKPGVIGGSKPKVATPKVVEKIAEYKRQN--PTMFAWEIRDRLLAERVCDNDT------VPSVSSINRIIRTK----------------------------------------------- |
10 | 3umcA | 0.13 | 0.12 | 4.23 | 0.60 | PROSPECTOR2 | | LIEQFQALERELGG-----TLPCVELTDRWRQQYKPADRVRNGQAP-WQHLDQLHRQSLEALAGEFGLALDEALLQRITGFWHRLLAGHALKADYGNTALLDVARHAGLPWDLLCADLFGHYKPDPQVYLGACRLLDLPLEYGPGQSQDLAHRQLAA |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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