Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160
| | | | | | | | |
| Seq | AAYSGMTALTSQAAVALVDNKGNLSKTFQAMSSSDSVKSLVTSMVIGGALAGFDEVMQFSKAANGTTVIDPAKAKLPMLSNGDWSKVAQRVAGQSVISSSIGTAINGGSFKDNFTTALLSNIGSQINAEGAKFIGDKGEVLGLPIDDPRRVISHAVIAGVAAEIGGGNAKGAAAGA |
1 | 2knvA | 0.08 | 0.02 | 0.66 | 0.14 | HHWb | | MLSMGFSDEGGWLTRLLQTKNYDIGAALDTIQYS-------------------------------------------------------------------------KH------------------------------------------------------------------- |
2 | 2lyiA | 0.16 | 0.13 | 4.34 | 0.84 | SPARKS-K | | HSGSLGDQLTSTLASALTKT-NTLKAVSASKPSANVAVAIVTSGLKKALGAL-------------------------RINAGVSSQLTSAVSQAVIAAPSVQILVSSGSVNNNA-----KQVASTLSENLVREMANTARRYRVNVPSVQADVSLVTSMTSTFVISSQTSVQMGG-- |
3 | 2zb9A | 0.13 | 0.10 | 3.55 | 0.81 | FFAS-3D | | --AEEVRAEVLHAVGELLLTEGTFERVARVSVSKTTLGALALDGYFHAVEDTL-----------------------AFPDTGDVRADLLAQLRAFTGGRILTELIGAAQTDADLATAYRQLYSAQRRALAAERLRHARELGQIRPDVDVQVLVDQLWGAVYHRL------------ |
4 | 2knvA | 0.08 | 0.02 | 0.66 | 0.14 | HHpred | | MLSMGFSDEGGWLTRLLQTKNYDIGAALDTIQYS-------------------------------------------------------------------------KH------------------------------------------------------------------- |
5 | 2lyiA | 0.18 | 0.16 | 5.19 | 0.82 | MUSTER | | HSGSLGDQLTSTLASALTKT-NTLKAVSASKPSANVAVAIVTSGLKKALGAL----INAGVSSQLTSAVSQAVANVRPGSS-------PAVYAKAIAAPSVQILVSSGSVNNNNAKQVASTLSENLVREMANTARRY--RVNVPEASVQADVSLVTSMTSTFVISSQT----SVQM |
6 | 5xtcr | 0.12 | 0.10 | 3.41 | 0.83 | CNFpred | | ANNLMWLAYTMAFMVKMPLYHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRLTL----------------------ILNPLTKHMAYPFLVLSLWGMIMTSSICQTDLKSLIAYSSISHMALVVTAILIQTP-----------WSFTGAVILMIAHGLTSSLL--CLANSNYER |
7 | 2knvA | 0.08 | 0.02 | 0.66 | 0.59 | HHsearch-2 | | MLSMGFSDEGGWLTRLLQTKNYDIGAALDTIQYS-------------------------------------------------------------------------KH------------------------------------------------------------------- |
8 | 2lyiA | 0.12 | 0.11 | 3.79 | 0.91 | Neff-PPAS | | ---GSLGDQLTSTLASALTKTNTLKAVSASKPSANVAVAIVTSGLKKALGALRINAGVSSQLTSAVSQ-AVANVRPGSS---------PAVYAKAIAAPSVQILVSSGSVNNNNAKQVASTLSENLVREMANTARRY--RVNVPEASVQADVSLVTSMTSTFVISSQ-------TS |
9 | 2jy7A | 0.08 | 0.02 | 0.66 | 0.34 | HHsearch | | RLIESLSQMLSGLTRLLQTKNYDIGAALDTIQYSKH-------------------------------------------------------------------------------------------------------------------------------------------- |
10 | 4ke2A | 0.16 | 0.16 | 5.27 | 0.76 | SP3 | | ASKAAVTAADAAAAAATIAAS--AASVAAATAADDAAASIATINAASAAAKSIAAAAAMAAKDTAAAAASAAAAAVASATINVKAAYAAATTANTAAAAAAATATT--AAAAAAAKATIDNAAAAKAAAVATAVSDAAATAATAAAVAAATLEAAAAKAAATAVSAAAAAAAAAIA |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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