>PF04797 (365 residues) FNYSFWNCSVHEHFISITNNREIHILPDDLLLPRCPSIRAILFKQIPSFKFSGSRSGPPG TVTSLYVYGHSKNLIKIKPMVVSECEQELIFKITFALECTIPPGSMEIFILPITFLKLDG LYLLCLEDYTSRIMSTSCMQMGTYLASETPQVFLKGGPVLNKHEPMPYLMAQKTKPFDKK MARVHTVQNEVCEVNSIYRGENHVKVAIQKDSEDINFLDTVVVGLTMTNRALVAFEYNPY FSCPWDWKRQSIPIIYDGPCIRIPAGRLAPVKYNNTYSSIYPNATAIITNSDSCADFHIS DCEWKPGKTACIVVTNTSTISVTISSGTHLGEAVFILAPKFFCRKIMSKTHVQKLSSAIC LPGNV |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | FNYSFWNCSVHEHFISITNNREIHILPDDLLLPRCPSIRAILFKQIPSFKFSGSRSGPPGTVTSLYVYGHSKNLIKIKPMVVSECEQELIFKITFALECTIPPGSMEIFILPITFLKLDGLYLLCLEDYTSRIMSTSCMQMGTYLASETPQVFLKGGPVLNKHEPMPYLMAQKTKPFDKKMARVHTVQNEVCEVNSIYRGENHVKVAIQKDSEDINFLDTVVVGLTMTNRALVAFEYNPYFSCPWDWKRQSIPIIYDGPCIRIPAGRLAPVKYNNTYSSIYPNATAIITNSDSCADFHISDCEWKPGKTACIVVTNTSTISVTISSGTHLGEAVFILAPKFFCRKIMSKTHVQKLSSAICLPGNV | |||||||||||||||||||
1 | 2bsyA | 0.10 | 0.06 | 2.12 | 1.56 | CNFpred | --------------------------------------------------------------IRYAFQN---DKLLLQQASV----GRLTLVNKT--TILLRPMKTTTVDLGLYARPPEGHGLMLWGS--------------------SRPVTSHVGIIDPGTGELRLILQNQR----RYNSTLRP-SELKIHLAAFRYATPQM-----GPINHPQYPGDVGLDVSLP------------------------------KDLALFPHQTVSVTLTVPPPSI-PHHRPTIFGRSGMQGILVKPCRWR-RGGVDVSLTNFSDQTVFLNKYRRFCQLVYLHK--------------------------- | |||||||||||||
2 | 2bt1A | 0.12 | 0.07 | 2.61 | 1.51 | HHsearch-2 | FQNDKLLLQQAVGRLTLVNKTTILLRPMKTTVDL--G----------------LYA-RPPEGHGLMLWGSTSRPVTSHVGIIDPGTGELRLILQNQYNSTLRPSELKIHLAAFRYATPQ--------------ME-------------EDK-------------------------------------------------------------GP-------------------I-------NHPQY-PGDVGLDVSLPKDLALFPHQTVSVTLTVPPP-SIPHHRPTIFGRSGMQGILVKPCRWRR-GGVDVSLTNFSDQTVFLNKYRRFCQLVYLHKHHLT-------SFYSPHSDAGVLGPRS | |||||||||||||
3 | 1qgc4 | 0.07 | 0.07 | 2.89 | 1.13 | Neff-PPAS | --SESVDSSGHSFMHWYQQKPGQPPKRASNLESGIPDRFSGSGSRTDFTLTIDPVEADDVATYYCQQSNEVPLTFAGTKLDLKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKID---GSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKERHNSYTCEATHKTSTSPIVKSFNRNELVESGGGLVKPGGSLKLSCTASGFIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTISRDN----AKNTLYLQMSSYCVRREDGGDEGFAYWGQGTVVTVSAAKTTP---PSVYPLAPGSAAAAASMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDL | |||||||||||||
4 | 2bt1A | 0.11 | 0.07 | 2.47 | 1.81 | HHsearch | FQNDKLLLQQAVGRLTLVNKTTILLRPMKTTVDL--G----------------LYA-RPPEGHGLMLWGSTSRPVTSHVGIIDPGTGELRLILQNQRNSTLRPSELKIHLAAFRYATPQ--------------ME-------------EDK-------------------------------------------------------------GP-------------------IN--HPQY----PGDVG--LDVSLPKDLALFPHQTVSVTLTVPPP-SIPHHRPTIFGRSGMQGILVKPCRWRR-GGVDVSLTNFSDQTVFLNKYRRFCQLVYLHKHHLTYSPHSDAGVLG-PRSLFRWA-S- | |||||||||||||
5 | 5c2vA1 | 0.07 | 0.06 | 2.54 | 1.02 | PROSPECTOR2 | --------------------EPVMTGGPVQGKALWTDYSGMSKEVQGPVPYQNYPHYIPEGSRIVLFDLNTKELKVLTNAGVHKKGGGCQIWEMGSGLRQMTDLKGTCRSPIYYAIEEGEGRIIWRDREGD--------WKEHGMVEKTGMIIFSGVMDEFHNPYAYNLYRLDTQGTGHVLSGIEFPHLNTTIDQITYNLSSNFDPWLQANGSRAGGEGRVMICVDNWDGAYPRPIYGNCDGEIGGTSGRSQAKITFGDRKIVMNWGVGQL----AAVSWDAPFNKTYEKLTGKDGGLYRSPYPLPRGDFGIYWFNFSKCAAGVYDDPNWNDHQPAPVYVKYKPRWINTFTAGKNFGVTVVTYQF | |||||||||||||
6 | 5hkjA | 0.06 | 0.04 | 1.84 | 1.56 | CNFpred | --------------------------------------------------------------LGFCDTTNKGLFQVVSGGMVLQLQDQVWVEKDPKKGHIY-EADSVFSGFLIFPSKFQSVFTVTRQNAVLTNPQGDYDTSTGKFTCKVPGLYYFVYHASHT--ANLCVLLYRS----VKVVTFCGHTQVNSGGVLLRLQGEEVWLAVNDYYDMVGSDSVFSGFLLFP-TQKIAFSATRT---INVPLRRDQTIRFD--HVITNMNNNYEPR-SGKFTCKVPGLYYFTYHASSRGNLCVNLMRGRERAQKVVTFCDYA-------TFQVTTGGMVLKLE---------------ENVFLQATDKN | |||||||||||||
7 | 4zchA | 0.09 | 0.08 | 3.07 | 1.11 | Neff-PPAS | -TEVMWQPALRRGRGLQAQGYGVRIQDAGVYLLYSQVLFQDVTFTMGQVVSREGQGRQETLFRCIRSMPHPDAYNSCYSAGVFHLHQGDILSVIIPRAAKLNLSPHGTFLGFVKLVTQDCLQLIADSETPTIQKGSYTFVPWLLSFKRGSFFIYGQVLYTDKTYAMGHLIQRKKVHVFGDRCIQNMPETNSCYSAGIAKLEEGDELQLAIPRENAQGDVTFFGALKLLGVTQDCLQLIAYTFVPWLLSFKRGSALEEKENKILVKETGYFFIYGQVLYTDKTYAMGHLIQRKKSLVTLFRCIQNMPETLPNNSCYSAENAQISLDGDVTFFGALKLL---------------------------- | |||||||||||||
8 | 3ecyA | 0.11 | 0.04 | 1.28 | 1.02 | HHsearch | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCVLRFAKLTENALEPVR----GSAKA---AGVD-LRSAYDVVVPARGKAIVKTDLQVQ-VPEGSYGRVAPR----FIDVGAGVVDEDGNLGVVLFNHSDVDFEVKHGDRIAQFICERIFYPQLVMV------DKL---------- | |||||||||||||
9 | 2qqpA | 0.07 | 0.06 | 2.63 | 1.02 | PROSPECTOR2 | GLLRYSVDAEQRPIVTIECPTVSESDLPLDGFPAFRTRNTFIQTLNNITNWRDLGTGQWAQFAPGWYYAEIGDRTDSVTQFLIDQGWWVGAHIPVKPQSETIPAAERFSAGSM-------TVSASNAIFQPSNTVARIVWSITPLPVATVALTTGTGGTNNTSGKFFSVEIDGNVNS---VWTFTAPASILAEGEPFAEEGDTTSFSM---------------TTITADTVVYSVSSSLTGSSVIVRGVTKGSGVSITPVTVGIDTEAVNRLSKYEQFLCKESGGAYIVHYKMNNENFGGFQFHYPGYDPENNALGLRGIVDTFENNFSSAVVHFTTNAGSTVGQFAHNRLQMELTGVYQADDN- | |||||||||||||
10 | 2we2A | 0.11 | 0.06 | 2.19 | 1.55 | CNFpred | --------------------------------------------------------------IRYAFQN---DKLLLQQASV----GRLTLVNKT--TILLRPMKTTTVDLGLYARPPEGHGLMLWGST--------------------RPVTSHVGIIDPDTGELRLILQNQR----RYNSTLRP-SELKIHLAAFRYATPQ--GPINHPQY----PGSVGLDVSLP------------------------------KDLALFPHQTVSVTLTVPPPSI-PHHRPTIFGRSGMQGILVKPCRWR-RGGVDVSLTNFSDQTVFLNKYRRFCQLVYLHK--------------------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |