Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180
| | | | | | | | | |
| Seq | GKSTLIDTIAGTNRGLLANEQQKQAILAAIARLEDLNPTPRPVEATNLLDGNWRLLYTTSKALLNLDRVPFYKLGQIYQCIRVETTSVYNIAEIYGLPYLEGLISVRAKFEPVSGRRVQVKFERSIIGLKSLIGYTSVENFIQQIETGKKFIAIDFPISSDTQQGWLDITYIDNDLRIGRGNEGSVFVLS |
1 | 4r04A3 | 0.08 | 0.07 | 2.86 | 0.78 | SPARKS-K | | VYSSYLDFVKNSDGHHNTSN----FMNLFLDNIWKLFGFENIN-----FVIDKYFTLVGKTNL-----------GYVEFICDNNKNIDIYFGEWKTSSSKSTIFVVVEPIYNPDTTSLDFSINKVLIAPDLYTSLININT---NYYSNEYYPEIVLNPNTFHKKVNINLDSSSFEY--KWSTEGSDFILV |
2 | 3lulB | 0.07 | 0.05 | 2.13 | 0.56 | FFAS-3D | | --ERLGNSARQLGIPFEIS---FDDWFEHLIQKIQKDNLYH---------GGIKAILSGGPASRGLAE--------------RGQVSQLIFQTFNYSIQKHPVRLISINWLRDKAN----------PLYQLSVNYLEAIIAQRQAIA----------------VGADDALFFNTENHVTETTCANLFLI- |
3 | 5ovnA1 | 0.12 | 0.09 | 3.19 | 0.30 | HHpred | | ------------IKQWPLTNEKIEALTEIVERLEREGKVNNPWNAIKKKSGKWRMLIDFRELNKLTGQLPHLQIKKQVTVLDIGDAYF--TIPLDPDYAPYTAFTLGRRFVWC-------------SL---PQGWILSPLIYQSTLDNI-----IQPFIR-QNPQLDIYQYMDDIYIGSNLSK------- |
4 | 3lifA | 0.12 | 0.11 | 3.93 | 0.72 | MUSTER | | SHKIALAQSETENLSHSLAEHATHTFQGADVVLDDIVSFKWRPHPSPVFDG--QLTYASVKPVPALNDDHTLLITGPIQSRTSGVWVFVVSRRLETTGKFFGVVVATIESEYLGPGGSISLLHSLLIQWPSLQTGRDANVLFQKALPRSPDGYYLTVSPFDGLTKYLAYRRVSRY--------PLVVTVA |
5 | 5kbpA | 0.12 | 0.11 | 3.69 | 0.76 | CNFpred | | VHRGMMTRFEN------ANDVGHFLADEATRQLTEAIDTS---VFPE--KAHPFVLFNTSG-------YQKTEVVTVEVEIERLPTPDYQVIDPTGKAVASRIVKEDVRFGYDLRQPYMAKYLTVELSVKEMAPFSWDSFALIQGE-------TKAFE---GSLLAQPNEMENEFIQVKIENNGSLTIAD |
6 | 3vcaA1 | 0.14 | 0.02 | 0.72 | 0.36 | HHsearch-2 | | -----------------------------------------------------------------------------------------------------------------------------------------------------------------KAGSYTTLRVGAYEVVIVRSRDGEVRAFH |
7 | 6d8vA | 0.09 | 0.09 | 3.38 | 0.76 | Neff-PPAS | | LAAAARTMSGVLGRGHAGQSTDRAGAINLLKANLEQHGFIDNTERGGNADGAFTPYWSKDNGNIQLSTFKADYAAEWYGLAASGKGAITQPYLAEGTDVPTTMTSIAYPVMSNGSQSGKWLAAPIPELLMKEYDGEGVESVKDALSTGTPRMIENLTYDGNEPFDRVVYPFSLPDV------NAQWLVLV |
8 | 4zsnQY | 0.09 | 0.04 | 1.41 | 0.41 | HHsearch | | KHKGLKLLFEKGVT-SGVPAQDVDRINDRLQAIDTGELNRQIYK-LHPREGYWSITVRANWR-------------ITFQ-FINGDAYILNYEDYH----------------------------------------------------------------------------------------------- |
9 | 5n8oA | 0.10 | 0.09 | 3.33 | 0.79 | SP3 | | LAGDFAASVKAGEESVSGVREQAILTQAIRSELKTQGVLGHPEVTMTALS-------PVWLDSRSRYLRDMYRPGMVMEQWNPETRSHDRYVIDRVTAQSHSLTLRD-----AQGETQVVRISSLDSSWSLFRPEKMPVADGERLRVTGKIPG-----LRVSGGDRLQVASVSEDMTVVVPGRAEPASLP |
10 | 3lifA | 0.14 | 0.13 | 4.51 | 0.69 | PROSPECTOR2 | | DKIALAQSETERNLSHSLAEHATHTFQGADVVLDDIWRPHPSPVFNERLDGQLTYASVKPVPALDNSDRSYFR-----YHRANDDHTLLITGPIQSRTSGVWVFVVSRRLETTDGKFVVATIERLLIQWPSLQTGRDANVLFQKALPRSPDGYYLTVSPFDGLTKYLAYRRVSRYVARTEDSVLS----G |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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