Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120
| | | | | | |
| Seq | MAVAVRTLQDQLEKAKESLKNVDENIRKLTGRDPNELRPGQARRLTIPGPGGGRGRGIGLLRRGLSDSGGGPPAKQRDIEGALLRLAGDQRARRDSRHDSDAEDDDDVKKPALQSSVVATSKERTRRDLIQDQ |
1 | 5voxO | 0.09 | 0.08 | 2.91 | 1.16 | SPARKS-K | | ISNESSQLDADVRATYANYNSAKTNLAAAERKKTGDLSVRSLHDIVKPEDFVLNSEHLTTVLVAVPKS------LKSDFEKSYETLSKNV--VPASASVIAEDAE-----YVLFNVHLF---KKNVQEFTTAA |
2 | 1w9rA | 0.12 | 0.10 | 3.49 | 1.24 | Neff-PPAS | | -EKKVAEAEKKVEEAKKKAEDQKEEDRRNY--------PTNTYKTLELEIAESDVEVKKAELELVKEEAKEPRNEEKVKQAKAEVESKKAEATRLEKIKTDRKKAEEEAKRKAAE-----------EDKVKEK |
3 | 3jc8Oa | 0.14 | 0.14 | 4.59 | 0.94 | SPARKS-K | | TEEEIGWAVAERRKLDLELADKSEIAQNLNEREMDVLEQKLSEALTELPEQRDIEELLAQINDKESVGGGEFFARIPIKMTVSGNYHEIALFLQEMANMRRISAKLKNEKVVLQSEFQATTFRFV-------- |
4 | 3jc8Oa | 0.12 | 0.10 | 3.45 | 0.47 | FFAS-3D | | --EEIGWAVAERRKLDLELADKSEIAQNLN----------------------ERRREMDVLEQKLSEALTELPEQRDIEEAQINDIGKKSGLELSSVTPGKESVGGGEFFARIPIKMTVSGNYHEIALFLQE- |
5 | 3eukH2 | 0.07 | 0.04 | 1.56 | 0.28 | HHpred | | AESVANILRKTIQREQNRILQLNQGLQNIAGQVKVRLVVN---IRDT-------------HSILLNA-LSDQHLSFSALAMLYKRINPHM------------------------------------------- |
6 | 2w0cT | 0.13 | 0.12 | 4.18 | 0.89 | MUSTER | | MANFLTKNFVWILAAGVGVQKADNAAKTAT-KPIADFLAELQFLVNGSNYVKFPNAGFVLTRDALQDDFIAYDDRIKAWLGTHDRHKDFLAEILDHERRVKPVYRKLIGNIIDASTIRAASGVEL-------- |
7 | 5gheA | 0.13 | 0.03 | 1.05 | 0.45 | CNFpred | | FKARCGILIKEAKQYEEAAKNIVTSLDQFLH------------------------------------------------------------------------------------------------------ |
8 | 1nyhA | 0.23 | 0.05 | 1.65 | 0.40 | HHsearch-2 | | LQGDLTFTKKCLENARSQISEKDAKINKLME------------------------------------------------------------------------------------------------------ |
9 | 2b5uA3 | 0.16 | 0.16 | 5.23 | 1.17 | Neff-PPAS | | ----VEAAERNYERARAELNQANEDVARNQERQAKAVQVYNSRKSELDAANKTLADAIAEIKQFNRFAHDPMAGGHRMWQMAGLKAQRAQTDVNNKQAAFDASDADAALSSAMESRKKKEDKKRSAENNLNDE |
10 | 4fjoD | 0.04 | 0.01 | 0.38 | 0.36 | HHsearch | | ----------------------------------------------------------------------------------------------------------GSFT--PRTAHILKPLMPSREEIVAT- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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