Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160
| | | | | | | | |
| Seq | LTNKIRKEMPEIDDERAEVINYGLQNIIGEIPKIFITLGIAYLLGIFKLTLITFLVIMPYRSFSGGFHLKTHLGCIICTTIFYCGIAFASKYIVLEQAIKYLLIFLVWVFGMFMVKLYAPADTENVPILRKKDRRKKQILSYIALSVGLIVAAFVPSNELANILIFGNLVQTLF |
1 | 5t77A2 | 0.16 | 0.16 | 5.17 | 1.17 | SPARKS-K | | VLSKISNDRKNFNYHLNDALKTTLFFTIPSMVGLIFLPIIRFFYEDTLITSKILIAYTLGLPFYGIYSTISRSYHAITPFIAATIVSLSNIILDIIFGLKYIGVALATSIAGIIGVLYLLFSVKTFP---IKDFLKISLNSLIMLFVIYLTDFTDNEFWFLIQILIGILVYLIF |
2 | 4k5yA2 | 0.13 | 0.12 | 4.19 | 1.09 | FFAS-3D | | ------------HYHVAAIINYGHCISLVALLVAFVLFLRIIHANLIAAFILRNATWFVVQLTMSPEVHSNVGWCRLVTAAYNYFHVMFGEGCYLHTAIPMALVLLINFIFLFNIVRILMTKLRASTTSETIQARKAVKATLVLLPLLGITYMLAFVVVFIYFNAFLESFQGFF |
3 | 3rkoB | 0.12 | 0.11 | 4.07 | 1.08 | CNFpred | | LQTWLADAM------GPTPVSALIHAATMVTAGVYLIARTHGLFLMTPEVLHLVGIVGAVTLLLAGFAQTDIKRVLAYSTMSQIGYMFLALGVQAWDAAIFHLMTHAFFKALLFLASGSVILAHEQNIFKMGGLRKSIPLVYLCFLVGGAALSALPLVTAGFFSKDEILAGAMA |
4 | 4jq6A | 0.07 | 0.06 | 2.63 | 1.14 | SPARKS-K | | STVFFFVERSDVPVKWKTSLTVAGLVTGVAFWHYLYMRGVWIYAGETVFRYIDWLITVPLQIIEFYLIIAVFWKLLIASLVMLIGGFIGEAWWIVGMIAWLYIIYEIFWAIYPIGYAWGYFGDGL---NEDALNIVYNLADLINKAAFGLAIWAAAMKDKETS----------- |
5 | 2l6xA | 0.08 | 0.07 | 2.97 | 1.05 | FFAS-3D | | --------GGDLDASDYTGVSFWLVTAALLASTVFFFVETSLTVSGLVTGIAFWHYMYMRGVWIETGDSPRYIDWLLTVPLLICEFYLILSLFKKLLVGSLVMLVFCLAWVYMIYELWAGEGKSACNTASPAVQSAYNTMMYIIIFGWAIYPVGYFNLNLIYNLAFGLIIWNV- |
6 | 6iz3A2 | 0.12 | 0.06 | 2.03 | 0.23 | HHpred | | -------------------------------------------MFPFFDMAHYLASVMSAREQAGALDSHSPMASWFSAMLHCFGGGILSSILLAPVGILANTTNIMLASAIWYMVYYFPYDLFYNC----------------------------------------------- |
7 | 4mndA2 | 0.09 | 0.09 | 3.29 | 0.90 | MUSTER | | ISRKINRK---ISTRISAAIVNKVNPNQMTLISFLVGAFSALASFFIPLAGLLYQFSSILDGC--GEIAMSKKGGYVDSILDRFVDFLFLAIIALLYPKTATVAMFAIFGSVMVSYTSE-YKAEFGESIRVLNYIPGKRDERIFLIMIFCLLSAISLQWIFWMFLFVAAISLTR |
8 | 4he8F | 0.08 | 0.07 | 2.92 | 1.07 | CNFpred | | -----------------TPVSALIHAATMVTAGVYLIARSSFLYSVLSYAIAVVGLLTAAYGALSAFGQTDIKKIVAYSTISQLGYMFLAAGVGAYWVALFHVFTHAFFKALLFLASGSVIHALGGEQDVRKMGGLWPQTRWHALIGALALGGLPLSGFWSKDAILAATLTYPF |
9 | 3jacA | 0.11 | 0.10 | 3.56 | 0.74 | HHsearch-2 | | GGGFFHDILTK-YRAATDVYALMF---LADIVDIIIIIFGFWAFGQVPQAFLFMMVILYLRKTVLGKLAFQVVLVVAIHIWMFFILPAVTERMSQNAVQLWYFVKCIYFALSAYQIRCGPTRILGNFLTK--------KYNHLNLFLFQGFR-LVPLVELRAVMDWVWTDTTLS |
10 | 4rfsS | 0.07 | 0.07 | 2.81 | 0.95 | Neff-PPAS | | VPFLGYIPFGPF--------SMTLIGLTVIVAGSALGPRDGLLIGGFWGLITFVRAFTWPSSPVAPLIFTNPLISILPRLLMGLVAGSLYLWGRHRQWSMRQAMQVAAGCAALTNTVLVLGLVFLFYQTPAVLGYVLMISLFTNGIPELILDVLVAPLIAMPLRRQWERLKPQ- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|