Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240
| | | | | | | | | | | | |
| Seq | PYEFTMLKSLQDPVNKLTEKAEKEDLEIESTKSVQDQHSQLISLDEESHAKESNYSADDSKDVISTLQGSCNHKQNSGAIDHLLDLQPEENASKDQFVRSLESEPGDKDDMVLLNEILNASSLDEGEFSKEWTAVFGQVALADLTMNSSAGDMESTSSSVAPTPSGYLPSQLLDQNMNDLQSSLHGWAANSVSPLSIPQPAQKPNSLNVNANKTPVKEPMKNPKDLTAWFSLFADLDPLSNPDAVGKTDKEHELLNA |
1 | 5mqfM | 0.07 | 0.07 | 2.71 | 1.29 | SPARKS-K | | AEEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNDAIIRGGLTRFTDQLGKCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYAQEESMIAAKMETASELGREEEDDVDLELRLARFEQLISRRPLL--------LNSVLLRQNPHHVHEWHKRVALHQGRPREIINTYTEAVQTVDP------FKATGKPHTLWVAFAKFYEDNGQ-----LDDARVILEKA |
2 | 2tmaA | 0.08 | 0.08 | 3.05 | 1.70 | Neff-PPAS | | ------MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEEDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYE------EEIKVLS--DKLKEAETRAEFAER |
3 | 5yfpB | 0.06 | 0.06 | 2.64 | 1.23 | SPARKS-K | | FIKNTTSSSNENPILRWMSIKMNGFQNELNEGHMISKIIHSQRLILQNNTNQDKSQGCVEINQLFQIDTGKDSEGLKSTVEPNKVNTISGTSYLNLNCQPSSQGLTDSPTIIEMWLLILKICDQFIEFWEHIEKFLDGTYQNSIINEKRKENILIGDSNIIESYQK-------SLILKEEQINEEEFITSVSQNLISFFTSSQSSLPSSLKDST--GDITRSNKDSGSP-LDYGFIPPNCNGLSCLRPKIVEPILKF |
4 | 2akhY | 0.09 | 0.08 | 3.15 | 0.48 | FFAS-3D | | PLDFQSAKGGLGELKRRLLFVIGALIVFRIGSFISSASIIIQLLTVVHPTLAEIKKEGESGRRKISQYTRYGTLVLAIFQSIGIATGLPNMPGMQGLVINPGFAFYFTAVVSLLGEQITERGIGNG---------ISIIIFAGIVAGLPPAIAHTIEQARQGDLHFLVLLLVAVLVFAVTFFVVFVERGQRRIVVNYAKRQQGRRVYAAQSTHLPLKVNMAGASSIILFPATIASWQPLFNPRETADNLKKS----- |
5 | 2y9yB | 0.18 | 0.09 | 3.05 | 0.38 | HHpred | | ---------------------------------------------------------------------------------------------------------SKKVFSNPLYRLRLV--AREWGYPREWRQQLPSDQDISKPTTPVVDPPETWNAELPLESNPLYNREMDKNGILALK-PLTDWCASHSSAHDPTQQVPREGVDNQRSKKKHLKNAVKSFSLYDKWVPLFED-QPLANPFSE------------ |
6 | 5mabA | 0.10 | 0.09 | 3.31 | 0.80 | MUSTER | | TRTLS--QQYLDDVRSIVIEGDSAAVSELILKRDIPIPAQLFATPNAFGSGPSNNPTHAYRGLNLSTCDGLRNGSTEQPARAIFTPGEDPKNAIRMPLGIAFNNPTDSAPILAIKEWILAGAPNDEHFTKEILPLFATDNTFGPDTPH--FSNQEPPSFHELNLTTYEGIMLGADSVAKGVDNATKVIIPGDPEASKVFQHLTEDRMPPGIDPSEDRDHP---QILFAWIKQGAKCE-------------------- |
7 | 2h4mA | 0.14 | 0.09 | 3.17 | 0.63 | CNFpred | | -------------------------------------------------------------DAIGTLADSVGHHLKPEYIQMLMPP------LIQKWNMLKDEDKDLFPLLECLSSVATAL---QSGFLPYCEPVYQRCVVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEV-----------------RQSSFALLGDLTKA-CFQHVK---CIADFMPI |
8 | 2pffB | 0.13 | 0.12 | 4.18 | 0.62 | HHsearch-2 | | YLEGNDIHALAAKLVKTKELIKNYIARIMAKRPFDKKSNSALFRAVGEGNAQLVANTDDYFEELRDLYQT-----YHVLVGDLIKFSAETLSDKDYLRSYLKGATGHSQGLVTAVAIA-----ET----DSWESFFVSVRKAITVLFFIGV-----R-CYEAYPNTSLPPSILEDSLENNEGVPSPMLSNLTQELPAGKQVKGPSPSGLDQSRIPFRKLKFSNRFLVKNNNAIPVYDTFDGSDLRVLSGSIERIVDC |
9 | 5xn7A1 | 0.09 | 0.08 | 3.00 | 1.41 | Neff-PPAS | | ---ILLDNPQQKSIERFILANFDNFEQ--PDELFLVDNKVLSHHDGRTRILARKANVELSVTELLDAAHVSGKVRGESYQQVIDALTEYHASTAEHADYELTSVEKLLNLRKQVEGYVLGHPDSGRVQANALLNQVNSRLEAVSVLV------VSEQSIKAHDSFSHLYDQLDNANLKESKHLYLDGNGDFVTKG--------------KGNLANIDKLGGSDAVLEKVKAAVSHEYGQVVADTIFAGLSANDLAKD |
10 | 2xt6A2 | 0.20 | 0.03 | 1.00 | 0.50 | HHsearch | | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TDNPDSIEDKYRNRGHLMADIDPLRLDNTRFRSHPLWDLDR- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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