Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240
| | | | | | | | | | | | |
| Seq | MTHNRRTVLDYASLADTSYTDEQKALMRSSLAVAQWEVVLNSSARNPVAHAASRVIEAPVSEGAKSFAGERVLGVRVLFPTWDSNANAMIKPAFVIPAYEVMAQVDDQGNVQAPTEEEKASGKGRFEDGYGVVKNVGVLKSIAVNTYGMNYPHGLYVMMRDQDGEVHRYFMGYLLFDSWKELVWNNPSYISDVRSREVRLYPVYPASTPHVVFEGFMVTRDAAHAGGDYVGYFKDVKIIYDKAVLSTV |
1 | 3jxsA | 0.15 | 0.08 | 2.85 | 1.35 | CNFpred | | --------------------------------VEGWDLNVGSSVTN---PPVFEVLETSDAP-----EGNKVLAVTVNGVG-NNPYDIHATAL--------------------------------------PVNVRGVTYTYTIWARAEQDGAVVSFTVGNQSHDDYGRLHEQQITTEWQPFTFEFTVS--------------------QETVIRAPIHFGFA-ANVGNTIYIDGLAIVD-------- |
2 | 1hn0A1 | 0.10 | 0.06 | 2.40 | 1.96 | HHsearch-2 | | KNLMQSEIYHFAQNN----------------PLADFSSD----K----NSILTL-----SDK--RSIMGNQSLLWKWK--G-G--SSFTLHKKLIVPTDKEASK----------------------------AWGRSSTPVFSFWLYNEKPDGYLTIDFGEKLSEAQAGFKVKLDFTGWRAVGVSLNNDLE--------------------NVDSIRFKAPS--NVSQGEIYIDRIMFSVDDARYQWY |
3 | 1hn0A1 | 0.11 | 0.07 | 2.65 | 1.37 | Neff-PPAS | | ----------------------ATSNPAFDPKNLMQSEIYHFAQNNPLADFSSDKNSILTLSDKRSIMGNQSLLWKWKG-----GSSFTLHKKLIVPTDKEASKAWGR----------------------------SSTPVFSFWLYNEKIDGYLTIDFGESTSEAQAGFKVKLDFTGWRAVGVSLNNDLEN--------------------VDSIRFKAP--SNVSQGEIYIDRIMFSVDDARYQWS |
4 | 1hn0A1 | 0.10 | 0.06 | 2.39 | 2.58 | HHsearch | | KNLMQSEIYHFAQN----------------NPLADFSSD----K----NSILTLS-----DK--RSIMGNQSLLWKWK--G-G--SSFTLHKKLIVPTDKEASK----------------------------AWGRSSTPVFSFWLYNEKPDGYLTIDFGEKLSEAQAGFKVKLDFTGWRAVGVSLNNDLE--------------------NVDSIRFKAPS--NVSQGEIYIDRIMFSVDDARYQW- |
5 | 1v0aA | 0.07 | 0.05 | 1.96 | 1.32 | CNFpred | | SAVGEKMLDDFEGV-------------------LNWGSYSGE--------GAKVSTKIVSG------KTGNGMEVSYTGT---TDGYWGTVYSL--------PDGDW-----------------------------SKWLKISFDIKSV-NEIRFMIAEKSIGVGDGEHWVYSITPDSWKTIEIPFS-SFRRRLDYQPPGQDM---TLDLDNIDSIHFMYAN---NKSGKFVVDNIKLIGAL------ |
6 | 2a5zC | 0.08 | 0.06 | 2.58 | 1.06 | Neff-PPAS | | -------------------EKLKLSTLTTSIATSDFYASYDFHSIGLTSANNISLLSTGNISLQNILSEGNHFGVQPIVSSTTANASFLAGL---------------------AIFPKESELEVTVYFKTPSAFNPAQLTVIGSTSIGLGISDRSGLIIENASAATETGSTYALSTSTWYICKFKLTDDYSDSGTQLYSYTSTAAFRADNATAHIGFKTQCKTATAGISLISIDLIEFKAKVSATRAK |
7 | 5z06A1 | 0.09 | 0.06 | 2.44 | 1.18 | HHsearch | | ---KPYDYVFFENS-----------LM-KGDYFYSQAKYTSP-S-WIKNAR----HHLPVAG-SVAFTPGNSLELTYVSAPGG--DWYSIQYC-PVRGN------D-----------------------------FFEPSTLSMQVRLRESAALPNIAIRYADSTTQYLNLRDTRPGVWHPVSIPLEDFGLNA-VND----------TNIKKLAAVALRPGT-ADGNEYTIYLDDIELLPASLPS--- |
8 | 4bj0A | 0.17 | 0.10 | 3.18 | 1.24 | CNFpred | | --------------------------------VEGWDLNVGSSVTN---PPVFEVLETSDAP-----EGNKVLAVTVNGVGNPFNIQATALPV--------------------------------------NVRP-GVTYTYTIRARAEQDGAVVSFTVGNQSFDEYGRLHHQQITTEWQPFTFEFTVS--------------------QETVIRAPIHFGYA-ANVGNTIYIDGLAIVDL------- |
9 | 1wmxB | 0.08 | 0.05 | 2.07 | 1.01 | Neff-PPAS | | -------------------------------SPVVGWSGSGMGELETIGDTLPVDTTVTYNG---------LPTLRLNVQTTVQSGWWISLLTLRGWNTHDLSQYVEN-------------------------------GYLEFDIKGKEGGEDFVIGFRDKYGLEIDVTTVISNYTDWQHVKIPLRDLMKINNGFDPS------------SVTCLVFSK---RYADPFTVWFSDIKITSEDNEKSAP |
10 | 1v0aA | 0.11 | 0.07 | 2.48 | 1.14 | HHsearch | | -SAVGEKLDDFEGV-------------------LNWGSYSGEGA------KVSTKI-V------SGKTGNG--EVSYTGTTDGY---WGTVYSLDGDW--------------------------------------SKWLKISFDIKSVAN--EIRF-IAEKSIEHWVYSI-TPDS-SWKTIEIPFSSFRRRLDYQPPGSGTL-----DLDNIDSIHFYAN----NKSGKFVVDNIKLIGALEHHH-- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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