>PF04620 (248 residues) MTHNRRTVLDYASLADTSYTDEQKALMRSSLAVAQWEVVLNSSARNPVAHAASRVIEAPV SEGAKSFAGERVLGVRVLFPTWDSNANAMIKPAFVIPAYEVMAQVDDQGNVQAPTEEEKA SGKGRFEDGYGVVKNVGVLKSIAVNTYGMNYPHGLYVMMRDQDGEVHRYFMGYLLFDSWK ELVWNNPSYISDVRSREVRLYPVYPASTPHVVFEGFMVTRDAAHAGGDYVGYFKDVKIIY DKAVLSTV |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 | | | | | | | | | | | | | |||||||||||||
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Seq | MTHNRRTVLDYASLADTSYTDEQKALMRSSLAVAQWEVVLNSSARNPVAHAASRVIEAPVSEGAKSFAGERVLGVRVLFPTWDSNANAMIKPAFVIPAYEVMAQVDDQGNVQAPTEEEKASGKGRFEDGYGVVKNVGVLKSIAVNTYGMNYPHGLYVMMRDQDGEVHRYFMGYLLFDSWKELVWNNPSYISDVRSREVRLYPVYPASTPHVVFEGFMVTRDAAHAGGDYVGYFKDVKIIYDKAVLSTV | |||||||||||||||||||
1 | 3jxsA | 0.15 | 0.08 | 2.85 | 1.35 | CNFpred | --------------------------------VEGWDLNVGSSVTN---PPVFEVLETSDAP-----EGNKVLAVTVNGVG-NNPYDIHATAL--------------------------------------PVNVRGVTYTYTIWARAEQDGAVVSFTVGNQSHDDYGRLHEQQITTEWQPFTFEFTVS--------------------QETVIRAPIHFGFA-ANVGNTIYIDGLAIVD-------- | |||||||||||||
2 | 1hn0A1 | 0.10 | 0.06 | 2.40 | 1.96 | HHsearch-2 | KNLMQSEIYHFAQNN----------------PLADFSSD----K----NSILTL-----SDK--RSIMGNQSLLWKWK--G-G--SSFTLHKKLIVPTDKEASK----------------------------AWGRSSTPVFSFWLYNEKPDGYLTIDFGEKLSEAQAGFKVKLDFTGWRAVGVSLNNDLE--------------------NVDSIRFKAPS--NVSQGEIYIDRIMFSVDDARYQWY | |||||||||||||
3 | 1hn0A1 | 0.11 | 0.07 | 2.65 | 1.37 | Neff-PPAS | ----------------------ATSNPAFDPKNLMQSEIYHFAQNNPLADFSSDKNSILTLSDKRSIMGNQSLLWKWKG-----GSSFTLHKKLIVPTDKEASKAWGR----------------------------SSTPVFSFWLYNEKIDGYLTIDFGESTSEAQAGFKVKLDFTGWRAVGVSLNNDLEN--------------------VDSIRFKAP--SNVSQGEIYIDRIMFSVDDARYQWS | |||||||||||||
4 | 1hn0A1 | 0.10 | 0.06 | 2.39 | 2.58 | HHsearch | KNLMQSEIYHFAQN----------------NPLADFSSD----K----NSILTLS-----DK--RSIMGNQSLLWKWK--G-G--SSFTLHKKLIVPTDKEASK----------------------------AWGRSSTPVFSFWLYNEKPDGYLTIDFGEKLSEAQAGFKVKLDFTGWRAVGVSLNNDLE--------------------NVDSIRFKAPS--NVSQGEIYIDRIMFSVDDARYQW- | |||||||||||||
5 | 1v0aA | 0.07 | 0.05 | 1.96 | 1.32 | CNFpred | SAVGEKMLDDFEGV-------------------LNWGSYSGE--------GAKVSTKIVSG------KTGNGMEVSYTGT---TDGYWGTVYSL--------PDGDW-----------------------------SKWLKISFDIKSV-NEIRFMIAEKSIGVGDGEHWVYSITPDSWKTIEIPFS-SFRRRLDYQPPGQDM---TLDLDNIDSIHFMYAN---NKSGKFVVDNIKLIGAL------ | |||||||||||||
6 | 2a5zC | 0.08 | 0.06 | 2.58 | 1.06 | Neff-PPAS | -------------------EKLKLSTLTTSIATSDFYASYDFHSIGLTSANNISLLSTGNISLQNILSEGNHFGVQPIVSSTTANASFLAGL---------------------AIFPKESELEVTVYFKTPSAFNPAQLTVIGSTSIGLGISDRSGLIIENASAATETGSTYALSTSTWYICKFKLTDDYSDSGTQLYSYTSTAAFRADNATAHIGFKTQCKTATAGISLISIDLIEFKAKVSATRAK | |||||||||||||
7 | 5z06A1 | 0.09 | 0.06 | 2.44 | 1.18 | HHsearch | ---KPYDYVFFENS-----------LM-KGDYFYSQAKYTSP-S-WIKNAR----HHLPVAG-SVAFTPGNSLELTYVSAPGG--DWYSIQYC-PVRGN------D-----------------------------FFEPSTLSMQVRLRESAALPNIAIRYADSTTQYLNLRDTRPGVWHPVSIPLEDFGLNA-VND----------TNIKKLAAVALRPGT-ADGNEYTIYLDDIELLPASLPS--- | |||||||||||||
8 | 4bj0A | 0.17 | 0.10 | 3.18 | 1.24 | CNFpred | --------------------------------VEGWDLNVGSSVTN---PPVFEVLETSDAP-----EGNKVLAVTVNGVGNPFNIQATALPV--------------------------------------NVRP-GVTYTYTIRARAEQDGAVVSFTVGNQSFDEYGRLHHQQITTEWQPFTFEFTVS--------------------QETVIRAPIHFGYA-ANVGNTIYIDGLAIVDL------- | |||||||||||||
9 | 1wmxB | 0.08 | 0.05 | 2.07 | 1.01 | Neff-PPAS | -------------------------------SPVVGWSGSGMGELETIGDTLPVDTTVTYNG---------LPTLRLNVQTTVQSGWWISLLTLRGWNTHDLSQYVEN-------------------------------GYLEFDIKGKEGGEDFVIGFRDKYGLEIDVTTVISNYTDWQHVKIPLRDLMKINNGFDPS------------SVTCLVFSK---RYADPFTVWFSDIKITSEDNEKSAP | |||||||||||||
10 | 1v0aA | 0.11 | 0.07 | 2.48 | 1.14 | HHsearch | -SAVGEKLDDFEGV-------------------LNWGSYSGEGA------KVSTKI-V------SGKTGNG--EVSYTGTTDGY---WGTVYSLDGDW--------------------------------------SKWLKISFDIKSVAN--EIRF-IAEKSIEHWVYSI-TPDS-SWKTIEIPFSSFRRRLDYQPPGSGTL-----DLDNIDSIHFYAN----NKSGKFVVDNIKLIGALEHHH-- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |