Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100
| | | | | |
| Seq | VEKEDLGLSLSLSFPQNYNSLQLNLMPSLVPSSVISQKPSWNDTFHSSDPNSDSCRADTRSFLRGIDVNRLPSTADCEEEAGVSSPNSTISSVSGKRSERE |
1 | 2v6lZ | 0.05 | 0.04 | 1.88 | 1.37 | Neff-PPAS | | ------------SVTVPNDDWTLSSLSETFDDGTQTLQGELTLALDKLAKNPSNPQLLAEYQSKLSEYTLYRNAQS----NTVKVIKDVDAAIIQNFR--- |
2 | 3j9aA | 0.08 | 0.06 | 2.36 | 1.01 | SP3 | | VRDPVIQERLDHDYAHHPLVARMNTLDQGNMSQAEYLVQKRHYLFLIAHHYYEAYLRRMGG------IQRRDHLQTLRDQKP------------------- |
3 | 6f1tg2 | 0.05 | 0.04 | 1.94 | 0.94 | SPARKS-K | | -------VVSCLDWSSQYPELLVASYN-NNEDAPHEPDGVALVWNMKYKKTTPEYVFHCQSAVMSATFA-----KFHPNLVVGGTYSGQLWDNRSNKRTPV |
4 | 3j40N | 0.15 | 0.13 | 4.35 | 0.34 | FFAS-3D | | -DQYPWGLRITLDNESLQ---RLGLNAKSLPAVGDSVSVMAMANVCSVSTRTTDHGEDNYVELQITDIGLAP---------QKRDDAKELKDAFYPDGEDD |
5 | 3i32A | 0.22 | 0.10 | 3.12 | 0.26 | HHpred | | --------------------------------------------------RQGEVRVATDVAARGLDIPQVDLVVHYRDEAGRTG--GRVVLLYGPR---- |
6 | 4ypiC3 | 0.20 | 0.18 | 5.71 | 0.97 | MUSTER | | --NAGQFLSFSLFLPKVGEKACLEKVQRQIQVHAEQGLIQYPTAWQSVGHMMVIFRLMRTNFL----IKFLLIHQGMHMVAGHDANDAVISSVAQAR---- |
7 | 4qyrA | 0.19 | 0.07 | 2.24 | 0.49 | CNFpred | | ----------------------------------------------------------------GVNLLLSVDTFAATHMAGMLSPDGRCKTFSAGADGYV |
8 | 3k9tA1 | 0.18 | 0.10 | 3.24 | 0.40 | HHsearch-2 | | FKENNLHV--SYSVPHKT-TLDLHTIPGN------KDRIPYLTSYYK--ENWGFSLTQDDDYEVVIDS--------------------------------- |
9 | 3c6rD | 0.10 | 0.08 | 2.93 | 1.31 | Neff-PPAS | | ---------FHLTTRNGEPHMIVSRQEKGKSLLFKTEDGVNMCTLMAMDLGELCEDTLT---------YKCPLLRQNEEDIDCWCNSTSTWVTYGTCT--- |
10 | 2hiyD1 | 0.27 | 0.12 | 3.65 | 0.36 | HHsearch | | -------------------------------------------------SNA----TRYALLVRGINVNKVV-AEELTN-LGINSGNIFFTSIDSKKLET- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|