Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180
| | | | | | | | | |
| Seq | MSTSGTLSNYYVDSFLLHESEELVPARYGPGALAQPARQPALGEHPDFSPCSFQSKASVFGTSWNPVHPPSANNVPAVYHPYVHHQAPVAAAPDGRYMRSWLEPMPGSLSFPGLPSSRHYGIKPEPLSARRGDCTTFDTHTLSLSDYACGSPPVDRDKQPSEGAFSENNGDSEASGDKPPIDP |
1 | 4k0mC | 0.09 | 0.08 | 2.96 | 1.07 | SPARKS-K | | ---KVYTIDEAARTAKFDETVEVHAKLGIQNVRGTVSLPHGLGKQVRVLAIAKKIKEAEEAGADYVGGEEIIQAAAAAAAAAAAAAAAAAAAAAAA-----AAAAAAAAAAAAAAAAAAAAA---AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA--------- |
2 | 2nbiA | 0.12 | 0.12 | 4.24 | 1.08 | MUSTER | | SECADVLEECPIDECFLPYSDASRPPSCLSFGRPDCDVLPTPQNINCPRCCATRPDNPMFTPSPDGSPPICSPTMLPTNQPTPPEPSSAPSDCGEVIEECPLDTCFLPTSDPARPPDPDCDVLPFPNNLGCPACCPFEC-SPDNPMFTPSPDGSPPNCSPTMLPTPQPSTPTVITSPAPSSQP |
3 | 6e5p2 | 0.08 | 0.08 | 3.01 | 1.86 | Neff-PPAS | | -VSNFRISAHTMNWVRRVPGGGLEWVASI---STSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRVEDT-------AIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSSKSTSGGTAALVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSS |
4 | 4k0mC | 0.11 | 0.10 | 3.78 | 1.33 | PROSPECTOR2 | | ARTAKFDETVEVHAKLGRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-----AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
5 | 5aftV | 0.06 | 0.05 | 2.12 | 1.04 | SPARKS-K | | --------------------------SGNKVSRQSVLCGSQNIVLNG--KTIIMNDCIIRGDLAN-VRVGRHCVVKSRSVIRPPFKKFSKGVAFFPLH------IGDHVFIEEDCVVNAAQIGSYVHVGKNCVIGRR---CVLKDCCKILDNTVLPPETVVPPFTVFSGCPGLFSGELPECTQ |
6 | 2ftcC | 0.12 | 0.12 | 4.23 | 0.54 | FFAS-3D | | WTKDGQVQDCHVLKYTSKENCNGKMATLSVGGKTVSRFRKATSILEFYRELGLPPKQTVFNITDNAAIKPGTPLYAAHFRPYVDVTAKTIGKGFQGVMKRWGQPATHGQTKTHRRPGAVATGDIGRVWPGTKMPGKMGNIYRTEYGLKVWRINTKHNIIYVNGSVPGHKNC--LVKVKDSKLP |
7 | 5y6pE1 | 0.20 | 0.15 | 4.73 | 0.27 | HHpred | | -KTKGHVNQYYVDKFRIA--SDWTGPKTQADAV--LGRTFKGA--------VLVPTPQEFDPAIAPRDNTVPASEGEVYPNYFDPQFLPSAYSDSSFFRSSMWESRRSLDFDGLARARFQKIAEPAVLSPMTEIPGLGSV--GAMDFIAQEE------------------------------- |
8 | 2nbiA1 | 0.12 | 0.12 | 4.24 | 1.03 | MUSTER | | SECADVLEECPIDECFLPYSDASRPPSCLSFGRPDCDVLPTPQNINCPRCCATRPDNPMFTPSPDGSPPICSPTMLPTNQPTPPEPSSAPSDCGEVIEECPLDTCFLPTSDPARPGRPDCDVLPFPNNLGCPACCPFEC-SPDNPMFTPSPDGSPPNCSPTMLPTPQPSTPTVITSPAPSSQP |
9 | 4cnlA3 | 0.16 | 0.05 | 1.63 | 0.47 | HHsearch-2 | | --KNAWQGAYYLKS-------------------------------------------------------------------------------NGKMAQGWVYDSSY---------QAWYYLKSDGSY------A---RNAW-QGNYYLKSDGKMA--------------------------- |
10 | 3jbmA | 0.05 | 0.04 | 2.07 | 1.83 | Neff-PPAS | | -TNDVHLSGMRISQAVLPAGTGTDGYVVVDATIVPDLLPRLGHAARIFQRYAVET----LEFEIQPMCPANTGGGYVAGFLPDPTDNDHTFDALQATRGAVVAKWWESRTVRPQYTRTLLWTSSGKEQRLTSPLCVGNNTDVVNVSVLCRWSVRLSVPSLETPEETTA--------------- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|