Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120
| | | | | | |
| Seq | LNPFKNMKKIKINLDDNCLLGNRCFVKIGNVRYIPTNSIETSESIMIRGHKFTLLELLYSPFHFQQSQHQYILPGFILTCIEKAKRNKNICKYCITDRGDGQDSLNINIFIQTIYTSIYIIIGLRIKYFWSSNFEIE |
1 | 3rlcA | 0.17 | 0.15 | 5.06 | 0.74 | SPARKS-K | | IDPPPGTGKY------TCPFA---IWSLEEVYEPPTRPWPIYNAVELQPREFALKDLLWRDWDFRGCRYIDLDATYLAT--DQAMRDQKDIREGKKPGAFGNIERFIYLYCSAAYHADGVIVGFWFTKFDKTKCPIQ |
2 | 4ckmA | 0.10 | 0.09 | 3.27 | 0.45 | FFAS-3D | | ---LETTVMVSTKMPPHEPQVRPLGVYVRTGRGGPNGVTRVVLRLTDPTDPFFLFELELLEDDYNAFKQHLELPRYLVGMLRDIADGASAYELSFVLNSGDSNRGTLR-VLETTDFKTVEHISLVLLR--------- |
3 | 1fsgA | 0.13 | 0.10 | 3.52 | 0.26 | HHpred | | ---------------------------ASKPIEDYGKGKGRIEPMYIPDNFYNADDFLVPPHCKPYIDKILLPGGLVKDRVEKLAYDEELHIICILKGSRGIDYLATIYSGRESSVPPFFEHYVRLKSYQN------ |
4 | 6c0bA3 | 0.11 | 0.10 | 3.68 | 0.61 | MUSTER | | SNNLKDV-KVITKDNVNILTG--YYLKDDIKISLSLTLQD-EKTIKLNSVHLD-ESGVAEILKFMNRKGSTNTSDSLMSFLESMNIKSI---FVNFLQSNIKFILDANFIISGTTSIGQFEFICDENNNIQPYF--- |
5 | 4indA | 0.14 | 0.11 | 3.76 | 0.67 | CNFpred | | -------ASIIID-EGLYLIRIKVYNTN-SVTVTPFFNNNNTMTYSIGNSEFEIYDIFTKEQ---NIYYIQLPPGLAI------------LEFSLERVFEKGNRINIPKIIHTS---GNGYISFRLRKTYAIKMPYS |
6 | 2pffB | 0.20 | 0.17 | 5.37 | 0.74 | HHsearch-2 | | GKQVEI---SLVNGAKNLVVSNLTLRKA----KAPSGLDQSRIPFSERKLKFSNRFLVASPFHSHL-----LVPA--SDLINKDLVKNNVSFN---AK-----DIQIPVYDTFDSERVDCIIRLPVKWETTTQFKAT |
7 | 6c0bA3 | 0.10 | 0.09 | 3.28 | 0.74 | Neff-PPAS | | ---SNNLKDVKVITKDNVNIL-TGYYLKDDIKISLSLTLQDEKTIKLNSVHLD-ESGVAEILKFMNRKGSTNTSDSLMSFLESMNIKS---IFVNFLQSNIKFILDANFIISGTTSIGQFEFICDENNNIQPYF--- |
8 | 5zb9A | 0.19 | 0.18 | 5.87 | 0.72 | HHsearch | | LFAAPPGLAVSISPSEVIIFGIEVFVKADSTGYLHLLKNAPKVSL-LRLISNAFLSFLVQVSLFARAQNQYLFPGSICRVIDPILREYEP------ETGSAKSSATAFLIVPGCDKFGFFPITARDRPRWLNSYPL- |
9 | 6c0bA3 | 0.08 | 0.07 | 2.91 | 0.59 | SP3 | | YYSNNLKDVKVITKDNVNILTGYYLKD-DIKISLSLTLQDEKT-IKLNSVHLD-ESGVAEILKFMNRKGSTNTSDSLMSFLESMNIKSI---FVNFLQSNIKFILDANFIISGTTSIGQFEFICDENNNIQPYF--- |
10 | 4mboA2 | 0.08 | 0.07 | 2.92 | 0.51 | PROSPECTOR2 | | NSPSVTEHTTQINPEGKEMYFASGLGNLYTIIGSDGSPVNLLNAEV---KILKTNSKNLTD----SMDQNYDSPEFEDVTSQYSYTNDGSKITIDWKTNSSTTSYVVLVKIPQSGVLYSTVSDINQTYGSKYSYGHN |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|