Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40
| | |
| Seq | GRTRGSEPPDRIRRKEARGGGLRRRTLATRKRGNGGGATRIKFKVVGVSPG |
1 | 1zvoC2 | 0.07 | 0.06 | 2.39 | 1.07 | SPARKS-K | | SLAKATTAPA--TTRNTGRGGEEKKKEKEKEEQEERETKTPEC-------- |
2 | 1zvoC2 | 0.07 | 0.06 | 2.39 | 1.22 | Neff-PPAS | | SLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPEC---------- |
3 | 5kpv33 | 0.04 | 0.04 | 2.06 | 1.04 | SPARKS-K | | AIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQYTPQNRSKDNGRVV |
4 | 1ddzA2 | 0.19 | 0.12 | 3.80 | 0.21 | FFAS-3D | | ----SSDDISKFYRTKSDSGALKAGNPQVTKGGESE--------------- |
5 | 4kk2A1 | 0.10 | 0.06 | 2.20 | 0.18 | HHpred | | ---------FLVLDDIMDESHTRRGQPCWFRLPKVGMIAA----------- |
6 | 2f3jA | 0.20 | 0.20 | 6.25 | 0.84 | MUSTER | | RVNRGGGP--RRNRPAIARGGRNRPAPYSRPKPLPDKWQHDLFDSGCGGGE |
7 | 5lcwS | 0.25 | 0.08 | 2.43 | 0.59 | CNFpred | | GIQQKAEPLERLQSQH----------------------------------- |
8 | 1ul5A | 0.17 | 0.12 | 3.86 | 0.45 | HHsearch-2 | | HLLPDFDEGKRSCRRKLERHNNRRKRKPVDKGGVA---------------- |
9 | 5dgfsM | 0.12 | 0.12 | 4.18 | 1.17 | Neff-PPAS | | KKADVPPPSADPSKARKNRPRPSGNEGAIRDKTAGRRNNRSKDVTDSATTK |
10 | 3jcuU | 0.33 | 0.10 | 2.94 | 0.32 | HHsearch | | RGTCVTMPSARICYK------------------------------------ |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|