Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140
| | | | | | | |
| Seq | LFLLLLLIIGYIANNQSLMIAVSFLLIVKLIGLDTKIFPSLQKNGINWGVTVITIAVLVPIATGEIGFKQLLDSLRSPYAWIALVSGISVAIIAKQGLSLLANDPHITTALVFGTILAVSFFKGVAVGPLIGAGIAYLLM |
1 | 3vvnA | 0.14 | 0.14 | 4.66 | 0.99 | SPARKS-K | | NGVAVFTSAWRITMILGMAAATTSVTGAAYGERNVEKLETAYLYAIKIAFMIELAVVAFIMLTAQVIKGDLISALLPVFLVLTPFGMMTSAMFQGIGEGEKSLILTIFRTLVMQVGFAYIFVHG-LRGVWIGIVIGNMVA |
2 | 3wdoA2 | 0.17 | 0.16 | 5.16 | 0.81 | FFAS-3D | | --LLKLNFGIMCLHMLLMSTFVALPGQLADAGFPAAEHWKVYL-----ATMLIAFGSVVPFAEVKRKMKQVFVFCVGLIVVAEIVLWVVGVQLFFVAFNLMEALLPSLIGTAMG-VYSTSQFLGVAIGGSLGGWID---- |
3 | 4n7wA | 0.11 | 0.09 | 3.11 | 0.28 | HHpred | | -------MLVKITRLFPVWALLLSVAAYFRP----TTFTGI-GPYVGPLLMLIMFAM-----GVTLRLDDFKRVLSRPAPVAAAFLHYLIMPLTAWILALFRMPPDLSAGMVL-----VGSVASGTASNVMIY------- |
4 | 6i1rA2 | 0.11 | 0.11 | 3.84 | 0.89 | MUSTER | | VIYLIHNNVQFAT-TYQIMGNLKIVTTGILFRLKRKL-----SNIQWMAIVLLAVGTTTSQVKGCGDSPCDSLFSAPLEGYLLGILSACLSALAGVYTEYLMKKNDNIMAMLLTMVLSIYLF-SVKATIQLFLGIIICII |
5 | 3rkoC | 0.13 | 0.11 | 3.71 | 0.84 | CNFpred | | PTAGSVDLAGILLKTAAYGLLRFSLPLFPNA------SAEFAPIAMWLGVIGIFYGAWMAFAQ-----TDIKRLI--AYTSVSHMGFVLIAIYTG--------SQLAYQGAVIQMIAHGLSA----AGLFILCGQLYERI |
6 | 2yvxA | 0.15 | 0.15 | 5.02 | 0.72 | HHsearch-2 | | PVALWLARVRWLVILILTGMVTSSIVLEAVTALA-FYVPVLLGTGGNTGNQSATLII-RALATRDLDLRDWRRVFLK-EMGVGLLLGLTLSFLLVGKVYWD-GHPSLVLIVFFANLVGAMLLRRLVSNPLVATSVARLLL |
7 | 4tkrA | 0.09 | 0.09 | 3.31 | 0.90 | Neff-PPAS | | GMIPMYVIAIRRGFWAAGFAGLLWGLLHFLTGKAYILMPSQAIIEYILAFSFIAFSGVFSKQVRSNQLKKAIEWAWGTMIIGGVARYFWHYVAGVLFWGAYAFQGWGAQLFSIVMNGASCLGTVL-VSGIIISILLKTSP |
8 | 2x2vA | 0.23 | 0.11 | 3.36 | 0.46 | HHsearch | | --------------------------------------------------------------------AFLGA--AIAAGLAAVAGAIAVAIIVKATIEGTTRQPELRGTLQTLMFIGVPLAEAVP---IIAIVISLLI- |
9 | 6i1rA2 | 0.11 | 0.11 | 3.85 | 1.30 | SP3 | | LIHNNVQFATLPSTYQIMGLKIVTTGILFRLVLKRKL-----SNIQWMAIVLLAVGTTTSQVKGCGDSPCDSLFSAPLEGYLLGILSACLSALAGVYTEYLMKKYSTSMAMLLTMVLSIYLF-SVKATIQLFLGIIICII |
10 | 4zowA2 | 0.15 | 0.15 | 5.02 | 0.69 | PROSPECTOR2 | | LLKELGRDYKLVLKNGRFVAGALALGFVSLPQLSSYEYGLLVRSLIIMGGWPIMIGAAAATVISSHAYLWMTAGL----SIYAFGIGLANAGLVRLTLFASDMSKGTVSAAMVGIEISKHAWLNGGNGLFNLFNMVIFLK |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|