>PF04109 (501 residues) WNWVNVYNLDAFLQEAYYYYEGKGFYSIALSRGLNLLTVGFVIGFSTFLLGCVDYSRIRP DKVTRLSEVVVKRCVSRFSGFTLLFFVLFTAFFAWQLVSYVLSMMRLVDMYRFYTYLLHI PDEDIQTISWPEVVRRIAAIRESNPLTALSSNAAAHQSTTTAKLDAHDIANRIMRQENYL IALFNKELLDLRVPLPEALKRIPMFRVDEDGKGRTLTRALEWNLRFCLMEYLFDESGRVR KVFLKSKNRAILIEGLRRRFIFMGILNAIFAPFIVLYLLMYSFFRYFEEYHKNPSNIGGR AYTPYAQWKFREFNELPHLFKRRLNESYPTASMYIGQFPNEKVTLIVRFVAFIAGSFAAV LLLASVVDPDLFLHFEITPHRTVLFYITVFGSILAVARGMIPEENRVFDPELLMSEVVQY THYMPDEWKGELHSKKVHAEFGELFQMKVVIFAQELLSVLLTPFVLWYSLPPCAPAIVDF FREFTVHVDGLGYVCSFAVFD |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 500 | | | | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | WNWVNVYNLDAFLQEAYYYYEGKGFYSIALSRGLNLLTVGFVIGFSTFLLGCVDYSRIRPDKVTRLSEVVVKRCVSRFSGFTLLFFVLFTAFFAWQLVSYVLSMMRLVDMYRFYTYLLHIPDEDIQTISWPEVVRRIAAIRESNPLTALSSNAAAHQSTTTAKLDAHDIANRIMRQENYLIALFNKELLDLRVPLPEALKRIPMFRVDEDGKGRTLTRALEWNLRFCLMEYLFDESGRVRKVFLKSKNRAILIEGLRRRFIFMGILNAIFAPFIVLYLLMYSFFRYFEEYHKNPSNIGGRAYTPYAQWKFREFNELPHLFKRRLNESYPTASMYIGQFPNEKVTLIVRFVAFIAGSFAAVLLLASVVDPDLFLHFEITPHRTVLFYITVFGSILAVARGMIPEENRVFDPELLMSEVVQYTHYMPDEWKGELHSKKVHAEFGELFQMKVVIFAQELLSVLLTPFVLWYSLPPCAPAIVDFFREFTVHVDGLGYVCSFAVFD | |||||||||||||||||||
1 | 5u1sA | 0.08 | 0.08 | 3.06 | 1.04 | SPARKS-K | LAIEDITTVDHSLNSIYSLLKSHHINSTVKQHLMIIVKLILGLASSEIIFLFNETNL---FQAHSLKNILLADFST-WNDYYLSNLKILALQIILKVDEYLPHILELFSHDKRYL----LKDP---NLKAHALTKIVLSFFSVTTSCKVLFGKQFKLPFKKFNITVECFSKNLLHNKIYLNSFYLSDKIMLLDILSNMSENRLLWSCISVDDLNVILENATLKCLVCLWSTIRLEGLPKNK--DILRQFDCTVIYINSNIAALLSELLGVLSEICIDYRLSNIISVLFNASVLFKSHSFLLKTANLEISNVLISNDSKTSHRTILKFEKFISSVYCMLRNDTLSFVFDFCQNAFIHSSEIMLSVLYGNSSI-------ENIPSENWSQLSRMIFCSLRGIFDLDHLLNKYELLIRIVYLLNLDMSKH-LTTN-LSKITKLYINKWLQKSDEKSFEMDFVKMLLCYLNFNFDKLSIELSLCIKSKEKYYSSIVPYADNYLLE | |||||||||||||
2 | 4f52E | 0.09 | 0.07 | 2.82 | 1.36 | FFAS-3D | ---------------------------MAVEELQSIIKRCQILLFQLAGQRCIELEIIQNEKNKVIIKNM---------GWNLVGPVVRCLLVYFLIFDLLVKLCNPKELLLGLLELIEEPSGKQISQSILLLLQPLQTVIQKLHNKAYSISLLPVPYSKMDDYGLCQCCKALIEFTKPFVEEVIDN-------------------KENSLENEKLKDELLKFCFKSLKCPLLTAQFFDPFRYF----ASEIIGFLSDSMASLAYLVFLLQFNMGHIEVFLVISKGLELLENSLLRIEDNSLLY-QYLEIKSFLTVPQGLVKVMTKSLAMLQLYINKLDSQGKYTLFRCLSGVEAFIIQNIQIDMSLKRKWFTGPQLISLQNSDRIMASLNLLRYLVIKDNENDNQTGLWTELLKPLHIGLNMSKAHYEAEIKNSQEAQKSMQLKVLHSALFTFDLIESVLA-------------RVEELIEIKT---------------- | |||||||||||||
3 | 1vt4I | 0.15 | 0.07 | 2.28 | 0.54 | HHpred | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------KDILSVFEFVDNFDCKDVQ----D----MP----------------KSILSKE--------EIDHIIMSKDAVSGTLLSKQ------EEMVQKFVEE------------VLRINYKLMSPIKTEQRQPS-MMTRMYIEQRD---RLYNDNQVFAVSRLQPYLKLRQALLELRPAK----------------------------NVLIDGVLGSGKTWVAL--------DVCLSYKVQLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH-------SSNIKLRIHSIQAELRRLLSKPYEAWNALTTRFKQVTDFLSAATTTH------------- | |||||||||||||
4 | 5mz61 | 0.09 | 0.09 | 3.33 | 0.93 | MUSTER | EYFQGLAKYQRTACKMFITWQTLRKEAMECRDREIFASIPAKLCFFYFYNG--ELCRAV----VCLLDYIDLS-DDTLAKEAALRWLMFLTELIEKKLKTWKSSKDMFSATEFAMNYLKKSEYRVEM--LEKLMKLRDKVKSDPTCSTLSNVPVGSALRECEFPDRVSHIQEAALKSDSLVRNRIPGLASSQFDNSVNASIWPFLDGHQEDSNYYVGSTIAWHFEMRRECALVNVTTAQTRDSM-SAMILNLRVALKSFFRVLQTTNTLAYYSSIIEEAG--SEKNAKLMRVSCVNLLSSNTIYPLHSSFAAEYMMSYAIHSDFQLSIKHFNDEFARIRERGMSSQVLMHIIQNEIFGMCVIRWLTKKLDALKIVRYLQQRTTDMILAVTQLGRQLEFPMECNYSWMRPRLAMRNEMNHYGHILYREWR-----CRLFAYVGRTSPWEAAYAWAESTQIGARNAVQSRLTMSGHDRFKTCVQSMPDEM----TLVQIAMAD | |||||||||||||
5 | 3m1iC | 0.10 | 0.09 | 3.22 | 1.43 | CNFpred | --IQLYKSEREVLVYLTHLNV-IDTEEIMISKLARQIWSWHNINTLSWAIGSIS-GTMSEDTEKRFVVTVIKDLLDL-GKDNKAVVASDIMYVVGQYPRFLKHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQP---------------ESEPFIQTIIRDIQKTTADLQ---PQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPN--MAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLIYYNMLQLYRAVSSMISAQ--------VAAEGLIATKTP--KVRGLRTIKKEILKLVETYISKA--NLDDVVKVLVEPLLNAVLEDYMNNV---------PDA----RDAEVLNCMTTVVEKVGHMIPQ-----GVILILQSVFECTLDMINKD-----YPEHRVEFYKLLKVIFAAFLELAFKLFVDAICWAFKHNNVEVNGLQIALDLV---------------- | |||||||||||||
6 | 1vt4I | 0.14 | 0.12 | 4.16 | 1.06 | HHsearch-2 | --------MD--FETGEHQYQY--------KDILSVFEDAFVDNFDCKDV-QDMPKSILSK--EEIDHIIMSKVSLRLFWMVKFVEEVLRIN--YKFLMSPIKTPMMTRMYRLYNDNQVFAKYNVSRLQYLKLRQALLELRPAKNVLIDG------VLGSGKTWVALDVC------LSYKVQCKDFKIFWLNLK-----------------NCNSPETVLEMLQK--LLY-QIDPNWTSRSDHSSNIKIHSIQAELRRLLKSKPYENCLLNAFNSCKILLTTRFKQVTDFLSTHISLDHMTLTPLLKYLDCRPQDLPREVLTNPRRLSIIAESIRDGLATWWKHVNCDKLTTIIESSLNVLDRLSVFPPSAHIPTI---LLSLIWFDVIKSDVMVVVKSLVEKQSTISIPSIYLELKVKLENEDSDDLIPPFYSHNIEHPEMTLFRFLDFRFLEQKISILNTLQQLKFYKPYLVNAILDFLPKIEEN-----LICSKMAED | |||||||||||||
7 | 5mz611 | 0.09 | 0.08 | 3.12 | 1.16 | Neff-PPAS | EYFQGLAKYQRTACKMFITWQTEIFASIPAKLCFFYFYNGELCRAVVCLLDYIDLSD-------------DTLAKEAALRWLMFLGETELIEKKLKTWKMDKSSKDMFSATEFAMNYLKKSEYRVEML--EKLMKLRDKVKSDPTCSTLSNVPVGSALRECEFPDRVSHIQEAALKSDSLVRNRIPGLASSQFDNSVNASIWPFLDGHQEDSNYYVHIGSTIAWHFEMRRECALVNVTT-----------AQTRDSMSAMILNLRVALKSASFFRVLQTTNTLAYYSSIIEEAGSEKNAKLMRVSCVNLLSSNPITIYPLHSSFAAEYMMSYAIHSDFSQLSIKHFNDEFARIRERGMSSQVLMHRD----------SSVRPRPNIIQNEIFGMCVIRWLTKKLDSKESADEDTMEIFNNALKIVRYLQMECNFEKVRLAMRNEMNHYGHILYREWRCRLFAYVGRTS---RDPWEAAYAWAESTQ--------IGARNAV | |||||||||||||
8 | 1vt4I | 0.14 | 0.07 | 2.40 | 1.02 | HHsearch | -------------------------------------------------------------------------------------------------------------------------------MDFET---------GEHQ------------YQY------KDILSVFEFVDNFDCKDVQ----D----MP----------------KSILSKE--------EIDHIIMSKDAVSGTLLSKQ------EEMVQKFVEE------------VLRINYKLMSPIKTEQRQPSM-MTRMYIEQRD---RLYNDNQVFAVSRLQPYLKLRQALLELRPAK----------------------------NVLIDGVLGSGKTWVALDVCLSYKVQKMDFKIFNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH-------SSNIKLRIHSIQAELRRLLSKPYECKILLTTRFKQVTDFLSAATTTHISLTPLCRPQDL- | |||||||||||||
9 | 5mz611 | 0.09 | 0.09 | 3.25 | 1.29 | PROSPECTOR2 | ----HIEKLDELRKNVSCTVI------GFAEQTAELQQEISELFLSKLARITSYYASSEYFQGTLRKEAMECRSKDREIFASIPAKLCFFYFYAVVCLLDYIDLSDMFSATEFAMNYLKKSEYRVEML--EKLMKLRDKVKSDPTCSTLSNVPVGSALRECEFPDRVSHIQEAALKSDSLVRNRIPGLASSQFDNSVNASIWPFLDGHQEDSNYYVHIGSTIAWHFEMRRECALVNVTTA----QTRDSMSAMILNLRVALKSASFFRVLQTTNTLAYYSSISEKNAKLMRVSCVNLLSSNPIVCNVCTIYPLH-------SSFAAEYMMSYAIHSDFSQLSIKHFNDEFARIRERGMSSQVLMH---RDSSVRPRPNIIQNEIFGMCVIRWLTKKLDSKESADEDTMEIFNNALKIVRYLQQRTTSWMRPTIDKERFEKVRLAMRNEMNILYREWRCRLFA-YVGRTSRDPIGARNAVQSRLEKCKRGLVT--------M | |||||||||||||
10 | 2r8qA2 | 0.16 | 0.02 | 0.66 | 0.17 | SAM | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TKPFETSRMWAMAVTEEFYRQGDMEKEKGVEVLPMFDRSKNNELARGQIGFIDFVAGKFFRDI-------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |