Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240
| | | | | | | | | | | | |
| Seq | MGCSDLMPGISGGTIALILGVYKKLIHSINAISIKNFKTLTVDLFWKKINGNFLLSLFSGILSAVFTFSFIIDFLINTYPIFLWSFFLGILVTSIFILKKHVNQWSYLNIGLLILGSFISFFITQISPKSNDIGLIYLFFCGFIGIIAMILPGISGAYILLILGAYQTVLNLIKMAIKSSISFDINILIPIYTKLFIFGLGILIGLRVFSSILKWLLDNENDKTMSILIGLMIGAIHKIWPWQEVFKVTI |
1 | 6oh2A | 0.09 | 0.09 | 3.38 | 1.29 | SPARKS-K | | VAAAYTVALRYTRTTAEELYFSTTAVCITEVIKLLISVGLLAKETFKASLSENLAKLSVPSLVYAVQNNMAFLALSNLDAAVYQVTYQLKIPCTALCTVLMLRTLSKLQWISVFMLCGGVTLVQWKPAVVVAQNFGAIAIAVLCSGFAGVYFSSDTSLWVRNIQMYLSGIVVTLAGTYLSDGAEIGFFYGYTYYVWFVIFLASVGGLYTSVVVKYNIMKGFSAAAAIVLSTIASVLLFGLQITLSFALGA |
2 | 4he8F | 0.12 | 0.11 | 3.97 | 1.16 | CNFpred | | --FSLLLDNLSGFMLLIVTGVGFLIHVYAIGYMYSRFFAYFNLFIAMMLTADSYPVMFIGWEGVGLASFLLARKAFIVNRIGDLGFMLGMAILSISELKEAMELKNPDLLALAGLLLFLGAVGKSAQ---PLMVWLPDAMAGPTPVSALIHAATMVTAGVYLIARSSFLYSVLPDVSYAIAVV-SAFGQTDIKKIVAYSTISQLGYMFLAAGVGYWVALFHVFTHAFFKALLFLASGSVIHAL------- |
3 | 6oh2A | 0.10 | 0.10 | 3.68 | 1.14 | Neff-PPAS | | YTRTTAEELYFSTTAVCITEVIKLLISVGLLAKETGSLGRFKASLSENVELAKLSVPSLVYAVQNNMAFLALSNL--DAAVYQVTYQLKIPCTALCTVLMLNRTLSKLQWISVFMLCGGVTLVQWKPAVVVAQGFGAIAIAVLCSGFAGVYFETSLWVRNIQMYLSGIVVTLAGTYLSDGAEIQEKGFFYGYYYVWFVIFLASVGGLYTSVVVKYT--DNIMKGFSAAAAIVLSTIASVLLFGLQITLSF |
4 | 5y78A | 0.08 | 0.08 | 3.01 | 1.02 | PROSPECTOR2 | | SPTLVLWYFFNFIFNIANKRTLNMYCTFLWVLGLRTKPNVSKKL------IKALIWPSLGHTLGHAATCMSFSLV--AISFTHVVKSAEPVFGAVGSALVLGEFFHPLTYLTLVPIVSGVALSAATELTFTWTGFITAMISNVAFVTRNITKTLIAQNTYALITIIFFMELPFALLMEGFPPLVSAIAGVSKAKLFGSIMFCSLFYHLYNEVSYLCLDNVSPVSFSIGNTIAIIGTMLYS---LAKAKLP |
5 | 5ogeA | 0.07 | 0.07 | 2.91 | 1.22 | SPARKS-K | | ---SVANSGPISILSYCGSSILMTVTNKFVVNLKDFNMNFVMLFVQSLVCTITLIILRNWFPISFLLVLMIYTSSKALQYPIYTIFKNLTIILIAYGEVLFFGSVTSMELSSFLLMVLSSVVATWGDVASFNPGYFWMFTNCITSALFVLIMDFDTMFYNNVL-----ALPILLLFSFCVEDWSSVNLTNNFSSLTAMIISGVASVGISYCSGWCVRVSTTYSMVGALIFIGFLSGIIYAVAKQKKQQAQ |
6 | 5oonA | 0.16 | 0.14 | 4.54 | 0.98 | FFAS-3D | | -GLTEFLPVSSTGHMI--------IVGHLLGFEGDTA-------------KTFEVVIQLGSILAVVVMWRRLFGLIGIHFGRLIHILLGMIPAVVLGLIKSLFNPINVMYALVVGGLLLIAAECLKPKEPRAPGLDDMFMIGCFQCLA-LWPGFSRSGATISGGMFSFLLAVPMMMGATALDLYKSWGFLTSGDIPMFAVGFITAFVVALIAIKTFLQLIKRIIPFAIYRFIVAAAVYVV---------- |
7 | 5oonA | 0.14 | 0.11 | 3.83 | 0.33 | HHpred | | ----------LGSILAVVVMFWRRLFGLIGIHF-GRPL----QHEGESKGRLTLIHILLGMIPAVVLG-LLFHDTIKSLFNP-INVMYALVVGGLLLIAAECLKPKEPR-----------------APGLDDMTYRQAFMIGCFQCLA-LWPGFSRSGATISGGMLSFLLAVALDLYKSWGFLTS---GDIPMFAVGFITAFVVALIAIKTFL-QLIKRISF-IPFAIYRFIVAAAVYVVFF-------- |
8 | 6oh2A | 0.10 | 0.09 | 3.43 | 0.95 | MUSTER | | TTAEELYF-----STTAVC--ITEVIKLLISVSLGRFKASLSENVLSPKELAKLSVPSLVYAVQNNMAFLALSNL--DAAVYQVTYQLKIPCTALCTVLMLNRTLSKLQWISVFMLCGGVTLVQWKPAVVVAQNFGAIAIAVLCSGFAGVY-DTSLWVRNIQMYLSGIVVTLAGTYLSDGAEIQEKGFFYGYYYVWFVIFLASVGGLYTSVVVKYT---NIMKGFSAAAAIVLSTIASVLLFGLQITLSF |
9 | 3rkoB | 0.08 | 0.08 | 3.03 | 1.15 | CNFpred | | IGFNLVLDGLSLTMLSVVTGVGFLIHMYASWYMRGEEGYSRFFAYTNLFIASMVVLVLALMYLGWEGVGLCSYLLIGMKAFVVTRVGDVFLAFALFILYNELGTLNF-MLMWATLMLLGGAVGKSAQ---PLQTWLADAMAGPTPVSALIHAATMVTAGVYLIARTHGLFLMTPEVLHLVGIVGAVTLL-DIKRVLAYSTMSQIGYMFLALGVQAWDAAIFHLMTHAFFKALLFLASGSVILACHHEQNI |
10 | 5oonA | 0.16 | 0.14 | 4.64 | 0.42 | HHsearch-2 | | EGLTEFLP-VSSTGHMIIVG---HLL----GFE-G------------DTAKTFEVVIQLGSILAVVVMFWRLFGLIGIHGSKGRLTLIHILLGMIPAVFHDIKSFNPINVMYAVVGGLLLIAAECLKPALDDMTYRQAFMIGCFQCLA-LWPGFSRSGATISGGMLSFLLAVALDLYKSWGFLTS---GDIPMFAVGFITAFVVALIAIKTFLQ-LIKRIS-FIPFAIYRFIVAAAVYVVFF-------- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|