Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100
| | | | | |
| Seq | FAVIRADNADKVNVALHDLEHYGHLRFLSKPKRIEPQYADNVLVSVVGVPLKSKCNSAALVELDNNAGAAISKLRKIHPPAHIVIVSPRHKVYEELVDKAELYPEF |
1 | 2kpoA | 0.12 | 0.11 | 3.98 | 0.84 | SPARKS-K | | YVLIISNDKKLIEEARKMAEKANELRTVK-----TEDELKKYLEEFRKE--SQNIKVLILVSNDEELDKAKELAQKMEIDVRTRKV-TSPDEAKRWIKEFSEEGGS |
2 | 3pm9A2 | 0.15 | 0.14 | 4.79 | 0.69 | FFAS-3D | | -AFVGLQSPDDALKLLGIAQGEAAGNLTS-FELIAETPLDFSVRHANRDPLEARYPWYVLIELRDDARAALESILERDGIVVDAAIANSVQQQQAFWKLREEISP- |
3 | 3hnoA | 0.11 | 0.10 | 3.78 | 0.34 | HHpred | | FFYNGGGDSADTCLKVSQLGTLYPIQAIHVPKTVDNDLAKYIAVSTLEASVASMSTKVFVLEVMGRHAGWIAAAGGLREIPVVILFPEISFDKQKFLAKVDSCV-- |
4 | 2l69A | 0.15 | 0.14 | 4.75 | 0.67 | MUSTER | | IVIVVFSTDEETLRKFKDIIKKNGFKVRTVR---SPQELKDSIEELV----KKYNATIVVVVVDDKAEKAIRFVKSLGAQVLIIIYDQDQNRLEEFSREVRR-RGF |
5 | 2mr5A | 0.04 | 0.04 | 1.95 | 0.72 | CNFpred | | VVIVVSNDERILEELLEVVLKSDNVKTVRTD---DKEKVKEEIEKARKQ----GRPIVIFIRGAYVVRDIVEYAQKEGLRVLVIKVAQDQELLERFYEQLKKDGVD |
6 | 3hnoA | 0.10 | 0.10 | 3.80 | 0.38 | HHsearch-2 | | FFYNGGGDSADTCLKVSQLGTLYPIQAIHVPKTVDNDLAKYIAVSTLEASVASMSTKVFVLEVMGRHAGWIAAAGGLASIPVVILFPEISFDKQKFLAKVDSCVGY |
7 | 2kpoA | 0.12 | 0.11 | 4.01 | 0.80 | Neff-PPAS | | LYVLIISNDKKLIEEARKMAEKANLELRTVK---TEDELKKYLEEFRKES--QNIKVLILVSNDEELDKAKELAQKMEIDVRTRKVTSPDEAKRWIKEFSEEGGSL |
8 | 2nydB1 | 0.16 | 0.10 | 3.46 | 0.48 | HHsearch | | QTYIPKDNVGPFKDKLSEN-GLAQEFFESE--------------------DVDEVKIEFMID-AYQKSRAEQLIKQYHPYETPVF-----DFIEIKQ--------- |
9 | 1wopA | 0.14 | 0.13 | 4.52 | 0.66 | SP3 | | LMVVNAANIEKDFNWIKSHSKNFDVEVS----NISDTKAQETLQELVEDGLEEAYYSFRKSIVAGVETL-VSRTGYTGEDGFELMLEAKNKVWDALMNLLRKIDGR |
10 | 2l69A | 0.12 | 0.11 | 3.99 | 0.56 | PROSPECTOR2 | | MVIVVFSTDEETLRKFKDIIKKNGFKVRTVR---SPQELKDSIEEL----VKKYNATIVVVVVDDKEEKAIRFVKSLGAQVLIIIYDQDQNRLEEFSREVRRRHHH |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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