>PF03856 (243 residues) DGTISCSDFPSGQGAVSLDWLGLGGWASIMDMNGNTATSCQDGYYCSYACSPGYAKTQWP SEQPSDGRSVGGLYCKNGKLYRSNTDTNSLCVEGQGSAQAVNKVSGSIAICGTDYPGSEN MVVPTVVGAGSSQPINVIKEDSYYQWQGKKTSAQYYVNNAGVSVEDGCIWGTEGSGVGNW APVVLGAGYTDGITYLSIIPNPNNKEAPNFNIKIVATDGSTVNGACSYENGVYSGSGSDG CTV |
![]() | |
|
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 | | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | DGTISCSDFPSGQGAVSLDWLGLGGWASIMDMNGNTATSCQDGYYCSYACSPGYAKTQWPSEQPSDGRSVGGLYCKNGKLYRSNTDTNSLCVEGQGSAQAVNKVSGSIAICGTDYPGSENMVVPTVVGAGSSQPINVIKEDSYYQWQGKKTSAQYYVNNAGVSVEDGCIWGTEGSGVGNWAPVVLGAGYTDGITYLSIIPNPNNKEAPNFNIKIVATDGSTVNGACSYENGVYSGSGSDGCTV | |||||||||||||||||||
1 | 4irtA | 0.09 | 0.09 | 3.30 | 0.75 | SPARKS-K | VFRNNSLVTHGDEQYISYYDNDGYLVLGKRKLDSEQQGNVKDAHNIISIDGEGYIHVSFD----HHGHPLNYCRSAPGSLELGDKPTGVDEGNVTYPEFYPLSGGDLLFVYRSGSSGRGNLVNRYSLKEHNAYWQLYVDEKSWVWRETWHHDICYARSFDNIKLSNAEYACRLPQNCE--LINQTSSADAGGNPYIATYWRE--PNSDVPQYRIVWNDGKWHQRQITDRQTPFTLKGIPIARP | |||||||||||||
2 | 2gsxA2 | 0.14 | 0.14 | 4.61 | 0.46 | FFAS-3D | --NSSCGEGYKLSGSVYQECQGTIPWFM--EIRLCKEITCPPGTTVTYTCNPGPERGTWSGPAPLFYNDTVTFKCYSGFTLKGSSPEIPVCEAGSRVELVNTSCGHAYQMCQDAENGIWFKKIPLCKVIHVNGKHTGMMAENF----LYGNEVSYECD-QGFYLLGECR--SDSKGHGSWSGPSPQRCPNPEVKHGYKLNKTHSAYSHNDIVYVDCNPGFIMNGSCH-TDNTWVPGVPT-CI- | |||||||||||||
3 | 2ahnA | 0.13 | 0.07 | 2.43 | 0.32 | HHpred | -----------------------------------------------------------------------------------------------ATISFKNNCPYMVWPGTLTSDQKPLSTTGFELASQASFQLDTPVPWNGRFWA--RTGCST--DASGK---FVCATADCASGNGAIPPFNIPA--GGGQDFYDVS------LVDGFNMSVTPQGGDCKTASCPANLQKKGSDSVVACL- | |||||||||||||
4 | 3hxjA | 0.19 | 0.18 | 5.84 | 0.72 | MUSTER | GNSIDSSPILAKNGTIYLGSSNKNGWFEIIECRPSIGKD---GSDKVYA-PDGTEKWRFDTSDFTIFTSDGHLYA-DGRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAIEKWRFKTNDAITSASIGKDGGSDKVYAINPDGTEKWNGYWTVTRPAISEDGVTSLDG-KWRFKTGKRIESSPVIG----NTDTIYFGSYDGHLYAINPDGTEKWNFETGSWIIATVIDENGTIYFGTRNG-KF | |||||||||||||
5 | 1thvA | 0.16 | 0.08 | 2.74 | 0.91 | CNFpred | -----------------------------------------------------------------------------------------------ATFEIVNRCSYTVWAAASKG-DAALDAGGRQLNSGESWTINVEP-NGGKIWARTD-SGICKTGDC--GGLLRCKRFG--RPPTTLAEFSLNQY---GKDYIDISNI----KGFNVPMDFSPTTRGCRGVRCAADI-------VGQCPA | |||||||||||||
6 | 2q7zA | 0.17 | 0.16 | 5.28 | 0.47 | HHsearch-2 | SSPAPRCQAPDHLFAFSITCLDVGIWSGPA-PQSDNRSLFSLNEVVEFRCQPGFVMKKWEPELPLHAERAASMRCTQGDWSPAAPTCEKSCDDFLLNGRVLFQKGSSASYCVLA--GLWNSSVPVCEQPNGRHT-GKPLEVFP-----FGKAVNYTCDPHGES-TIRCTSD--PQGNGVWSSPPIGPEYGRPFSITCLVWSSPTDIQVGSRINYSCTTGHRLIGECILSTAHWSTKEAPRCAV | |||||||||||||
7 | 4fj6A2 | 0.12 | 0.12 | 4.08 | 0.89 | Neff-PPAS | TDGLPHGQNGVGDPSILVDEKTNTIWVVAAWTHGGNERAWWNSPGTPDETAQLLVKSEWSEPINVKDPSWYFLLQGPGRGIT---QDGTLVF----PIQFIDATRVPNAGIYSKDRGTWHLHNLARTNTTEAQVAEVEPGVLLNRDNRGGSRAVATTKDLGKTWTEHPSSRSALQESVCASLIKVNAKDNITGKDLLLFSNPNTTKGNHITIKASLDGGLTWPTEHQVLLDEAEGWGYSCLSI | |||||||||||||
8 | 2ehfA | 0.17 | 0.05 | 1.48 | 0.31 | HHsearch | SGKGGCGDPGIAYGKRTG-------------------SSFLHGDTLTFECPAAFELVG---------ERV--ITCQNNQWSGNKP----SCSGPSSG-------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
9 | 2ahnA | 0.15 | 0.09 | 2.90 | 1.01 | SP3 | -----------------------------------------------------------------------------------------------ATISFKNNCPYMVWPGTLTSDQKPQLSTGFELASQASFQLDTPVPWNGRFWAGCSTD------ASGKFVCADCASGQVMNGNGAIPPAEFNIPAGGGQDFYDVSL----VDGFNLPMSVTPQGGDCKTASCPANPSELQKKGSDGSVV | |||||||||||||
10 | 4yw0A3 | 0.08 | 0.08 | 3.22 | 0.87 | PROSPECTOR2 | NAVTGHLIYTANDTTLAFDDFAPVPLEWPREVGGRDLQISGGATYIDDVMPAGVSFREATRKDSVPTNYIAYISSNDHLLPPIMGLNRNAPYLGPGRILIPSYTGKESAFIYSDDNGAVKVVPLPSSWSAEAQFVELSPGVIQAYMRTNNGKIAYLTKDAGTTWSAPEYLKFVSNPSYGTQLSIINYSQLDGKKAVILSTPNSTNGRKHGQIWIGLINDDNDYSNLMFEKFDSWSRNELHMKL | |||||||||||||
|
|
|
References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |