Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180
| | | | | | | | | |
| Seq | RMARIALTTIRTNPKLLEASVPSLLGAVMQAAQLGLEPGLIGHCYLVPFKNGKTGQTDVQFIIGYKGMIDLARRSGQIQNIYAHAVYEKDEFEYELGLEPKLKHKPSMEADRGEMIGVYAVAHFKDGGYQFEFMPKEEIEKRRRRSKAANNGPWVTDYEEMAKKTVIRHMWKYLPISVEIQQAAAHDETYRRDVTD |
1 | 4fyeA | 0.14 | 0.11 | 3.83 | 0.75 | SPARKS-K | | KVEGSLQQFTQAVAKASGHKLKALDKEGHNIRSHN------RDTLIHRFKNSKEGEEQFIMYIPCGRYTKRQQRLGK------------------DESDLVL--------GNSSMARMIAGTRHSDGTIHHDSFSGARMPY--SDFKGADD------YKKLAIKAVTLINQEEVIQTLAQRQIDRMTNEDLWNKIP |
2 | 4o01A3 | 0.13 | 0.10 | 3.35 | 0.74 | FFAS-3D | | HALRNAMFALESAPNL-----RALAEVATQTVRELTGFD---RVMLYKFAPDATGEVIAEARREGPMHMQYLRNMGVGSSLSVSVVVGG------------------------QLWGLIACHHQTPYV-----LPPDLRTTLEYLG------------RLLS--LQVQVK-EAADVAAFRQSLREHHARVALAAAH |
3 | 4fp9B | 0.12 | 0.10 | 3.59 | 0.25 | HHpred | | --PEPVCVVLKKSPQLLKLPIMQMRKRSSYLQKLGLGEGKKRVLYCCPEIFTMRQDITEKCLFTVQQVTKILHSCPSVLREDL------GQL------EYKFQYAYFMGIKHPDIVK---------S-E-YLQYSLTKIKQRLGRYQTPDKKGQPNLLKDILRVSEAEFLARTACTSVEFKKLLAREEE------- |
4 | 1ykdA1 | 0.10 | 0.09 | 3.39 | 0.82 | MUSTER | | QIVHQTLSMLDSHG--FENILQEMLQSITLKTGELLG-EEKQELWSIVAAGEGDRSLEIRIPAD-KGIAGEVATFKQVVNIPFD-FYHDPRSIFAQKQEKITGYRTYTLSEQGRLVAVVQLLNKLKPYSP----------PDALLAERIDNQGFTSADEQLFQ--FAPSIRLIL-ESSRSFYIATQKQRAAAAMMK |
5 | 4cqdA | 0.11 | 0.10 | 3.50 | 0.69 | CNFpred | | --RDAAIEDGL--KYYKNATHEEIKRHVIEHAHMQVL---HGTLYTRTHVDV----DSVAKTKAVEAVLEAKEELKDLIDIQVVAFAQ-SGFFVDLESESLIRKSLDM---GCDLVGGVDPATRE-------NNVEGSLDLCFKLAKEYVDIDYHIHDIGTVGVYSINRLAQKTI-RVTTSAAWCFADAPSEWLDE |
6 | 4bw5A1 | 0.15 | 0.03 | 1.03 | 0.35 | HHsearch-2 | | TIALEKAEFLRDHVCVSPQELETLIQHALDADNAGVSPIG------------------------------------------------------------------------------------------------------------------------------------------------------------ |
7 | 3ibjA1 | 0.12 | 0.10 | 3.59 | 0.76 | Neff-PPAS | | ---DRDRKILQLCGELYDLDASSLQLKVLQYLQQETRVSEDNLQLSCKVIGDKVLGEEVSFPLT--GCLGQVVEDKKS--IQLKDLTSEDVQQLQSMLGCELQAMLCISRATDQVVALACAFNKLEGDLF-------------------------TDEDEHVIQHCFHYTSTVLTSTLAFQKEQKLKCECQALLQV |
8 | 4fp9B1 | 0.15 | 0.04 | 1.37 | 0.28 | HHsearch | | SEPEPVCVVLKKSPQLLKLPIMQMRKRSSYLQKLGLGEGKKRV----------------------------LYCCPEIFTM------------------------------------------------------------------------------------------------------------------- |
9 | 1q9iA | 0.14 | 0.13 | 4.51 | 0.88 | SP3 | | LMFEDTMKGGQNDPALVKVLSSHSKDSVDWMTAMGADLTGASVNRAHRPTGGCGVGAHV-----VQVLYDNAVKRGTVKGILVKGMYKGKGFISTNQPGQYIQAHPTLSVKGGVMVG--AILVNREGKSAYLIFDDSVRKSLCKIDKYIGLGVAPTADS-------LVKLGKMEGIDKALTETVARYNSLVSSGKD |
10 | 4wy9A | 0.08 | 0.07 | 2.84 | 0.71 | PROSPECTOR2 | | NITKNTEDILASTEMFRSTSKEDLIDNITNIITNTFDNSAYSNFTYLYLIDP-----------PEYFKEESKFFNTQSGKFVMLYADEEGIKAIQASGENKVYIKMNLEGQDFDAVNVAIPIFDRKNQVVGMTLDFSDIATYLLDPKGQKYDGELPNKNLVLKN------LKDINPNKGAQETYKAKYSVFKPLKK |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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