>PF03410 (596 residues) MIVLSNGVRIFINPYMIKDIYLGIASFGFENDIGNILGVAHLLEHILISFDSSKYVANAS TARSYMSFWCNSIKGRSNRLDAIKTLISWFFTGNGRIKDIFTPTKIKDHIKELENEYYFR NEIFHCMDVLTFLSDGDLYNGGRIDMINDIDTLENILYSRMHRIIGPNTIIFIKELDEET LSLLSNTFGKLPSCPLTIPCNSFSSIVGKVVMMPSPFYTVMVNVKQSLENILAIMCLYEI YHLIDYETVGDQLYITISFVKEHEYDNFLKGVSMLKFIPDEIKFNHSDDFLMNLYLCFPW IKNDIFDYIVDVNNNMLNMFKSLEDEIYTSIRYGKYISIYPNFSKSIFNKTDRQKHKIVV LDCKIDHENKDSSNIINNNIYLMKKQMINNEIHIKYGDKAFIDYAILGIMYKNNKIFKSN HGINIHHQFSSDDINTILESDTFLKYSKSKPAAIYQYLILSFFVSGNSIEDILSKRESTI NFCKDYKNKILFGKQLRYDIKTNSSFVCGIVKGSSISNETLTNLMWSLKKKGLIYSLEFT KLDKKIFYIFMFTIYPEDVFKIITSNKMFNRHCIVVSNKSDIEDFSSLKKDIIIKI |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 500 520 540 560 580 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | MIVLSNGVRIFINPYMIKDIYLGIASFGFENDIGNILGVAHLLEHILISFDSSKYVANASTARSYMSFWCNSIKGRSNRLDAIKTLISWFFTGNGRIKDIFTPTKIKDHIKELENEYYFRNEIFHCMDVLTFLSDGDLYNGGRIDMINDIDTLENILYSRMHRIIGPNTIIFIKELDEETLSLLSNTFGKLPSCPLTIPCNSFSSIVGKVVMMPSPFYTVMVNVKQSLENILAIMCLYEIYHLIDYETVGDQLYITISFVKEHEYDNFLKGVSMLKFIPDEIKFNHSDDFLMNLYLCFPWIKNDIFDYIVDVNNNMLNMFKSLEDEIYTSIRYGKYISIYPNFSKSIFNKTDRQKHKIVVLDCKIDHENKDSSNIINNNIYLMKKQMINNEIHIKYGDKAFIDYAILGIMYKNNKIFKSNHGINIHHQFSSDDINTILESDTFLKYSKSKPAAIYQYLILSFFVSGNSIEDILSKRESTINFCKDYKNKILFGKQLRYDIKTNSSFVCGIVKGSSISNETLTNLMWSLKKKGLIYSLEFTKLDKKIFYIFMFTIYPEDVFKIITSNKMFNRHCIVVSNKSDIEDFSSLKKDIIIKI | |||||||||||||||||||
1 | 5cioA | 0.11 | 0.10 | 3.61 | 1.01 | SPARKS-K | SWQLDNGLAVRAISTPAEAAAALVREAGSFQAPAAWPGLAHLLEHMLFRGAQDGLMLNATTQATQTAFFFEVGAD--PLAEGLARLSDMLAA------PQLAAEAIAQEIEVIDAEYRLLRGETRCEAAQRQMFSGFFHIGSRAAFGSDISALQQALRQFHHHYYRAPLWLQGPQSLEQLHALAQRYGGGLPS--GSETLPPLAAGQDYTLSLPGAPQRLVFTLPHCRSRRLERLLLLARLRLGYARCGENSALLSFIFTVNHG------------------SASEAAHIESALLAWLQALNALQLAHFGQLANRDFHRLDQLRARALAMLMAAPRRRLAVLPEGG---GETREIQGLPLTLGPFVGAALEPFRFFSASAALPIPPLPAGQAPLRHLPDEAQPVLLLRPALSEESVERHQGVWLLQLAGSHGLICHGLNVVNRALTQPPAIINEAARNLRHAQLKQQNLAQLPAAKRRLSHLLYDFPYAITLHPPVTLTESGAEHALLQFYPLQSLARLYAPRYFQRLRERNVGYQCTFHRCTHVEGLLFALQSPAEQLRQLTDEFHELTHV--------SVGELEQTQQALQQNL | |||||||||||||
2 | 5cioA | 0.12 | 0.11 | 4.05 | 1.49 | FFAS-3D | -WQLDNGLAVRATPGAEAAAALVRIEAGSFQAPAAWPGLAHLLEHMLFRGSANFSRLNATTQATQTAFFFEVGA--DPLAEGLARLSDMLAAP------QLAAEAIAQEIEVIDAEYRLLDGETRCEAAQRQMFSGFFHIGSRAAFGSDISALQQALRQFHHHYYRAPLWLQGPQSLEQLHALAQRYGGGLPSGSETLPPLAAGQDYTLSLPGAPQLRLVFTLPHCRSRGWLRRLLLARLRAHAWGDAVENSALLSFIFTSASEAAHIESALLAWLQALNALTPGQLAHFGQLANRDFH--RLAPLDQLRARALGLPPTEQDWTRQLAMLMAAPRRRLAVLP--EGGGETREIQGLPLTLGPFVGAALTPTVEPFRQAPLRHLHPDEAQPVLLLRPSSQAALRPEAAELAHREGHLSRHQGVWLLQLAGSHGLICHGLNVRALTAQPPAIINEAARNLRHAQLKQQNDIRRLLAQKRRLSHLLYDFPYAITAHPPVTLTESGAEHALLQFYPLQSDEAEGLARLYARLRERNVGYVVTFHRCTHVEGLLFALQSPRQLTDEFLQQMHHELT-------HVSVGELEQTQQALQQNL | |||||||||||||
3 | 1q2lA | 0.13 | 0.12 | 4.22 | 1.36 | HHpred | AIRLDNGMVVLLVSDPQALSALVV-PVGSLEDPEAYQGLAHYLEHMSLM-GSKGGSHNASTAPYRTAFYLE-VEND-ALPGAVDRLADAIAEPL------LDKKYAERERNAVNAELTMARDGMRMAQVSAETINPAKFSGGNLETLSDKPPVQQALKDFHEKYYSANAVIYSNKPLPELAKMAADTFGRVPNKESKKPEPVVDAQKGIIIHLPRKVLRVEFRIDNNSAKTDELITLIGNRGLVNSDPNGNSGVLAISATDKGNRDQVVALLREKGIDKQYFDMDYVEWLADTMIR-VPVE--HTLDAVNIADRYDAKAVKERLAMM--TPQNARIWYISPKEPHNFVDAKAADIA-LS-LPELNPYPDDIKSEKKYDHPELIVD-ESNLRVVYAPSRYFPKADVSLILRGISFSTN-ANNGLMVNANGYTQRLPQLFQADQLDSAEKGKAFEQAIMPAQMLSQVPITLKEVLAYRDALKSLAGARNKDVVVDKKQSVIFEKDSALAAVFVPTGYDLGQIVQPWFYQLREEQLGYAVFAFPMSGRQGMGFLLDKQPSFLWERYKAFFPTAEAKL---RAMKPDEFAQIQQAVITQM | |||||||||||||
4 | 1hr6A | 0.12 | 0.09 | 3.06 | 0.84 | MUSTER | LSSLANGLKVATSNTPGHFSALGLY-AGSRFEGRNLKGCTHILDRLAFKVEGRAMAYQCTSSRENLMYQASVFNQD--VGKMLQLMSETVRF-------KITEQELQEQKLSAEYEIDEVWPELVLPELLHTAASGETLGSPLICPRGLIPSIKYYLLDYRNKFYTPEVAAFVGVPHEKALELTGKYLGDWQSTHPPITKKVAQYTGGESCIPPAPVF------GNL----------------------PELFHIQIGFE-------------GLPIDHP----DIYALATLQTLLG------------GGGSFSAGGPGKGMYSRLYTHVLNQYYFVENCVAFNHSYS-----DSGIFGISLSCIPQAA----------------------------PQAVEVIAQQMY----NTFANKDL-----RLTEDEVSRAKNQLKSSLMNLESKLVELEDMGRQVLMHGRPVNEMISKIEDLPDDISRVAEMI-FTGNVNNAGNGKGRATVVMQ-----DRGSFGDVENVLKAYGL-------NSSS---------------------------------------------------- | |||||||||||||
5 | 1hr6B | 0.14 | 0.09 | 3.21 | 1.23 | CNFpred | TSKLPNGLTIATEYI-TSSATVGIFVAGSRAENVKNNGTAHFLEHLAFKGTQN-SHLNAYTSRENTVYYAKSLQ---DIPKAVDILSDILT------KSVLDNSAIERERDVIIRESEEVEVVFDHLHEITYKDQLGRTILGPIKNIITRTDLKDYITKNYKG--DRMVLAGAGAVHEKLVQYAQKYFGHVPKSESPVPLGSPRG-------PLPVFCRGERFIKE--------------------NTL-PTTHIAIALEGV--------------------SWSAPDYFVALATQA----------IVGNWDRAIGT--SPLAVAASQNGSLANSYMSFSTSYA---------DSGLWGMYIVTD--------------------------SNEHNVRLIVNEILKEWKRI------------KSGKISDAEVNRAKAQLKAALLLSLGSTAIVEDIGRQVVTTRLSPEEVFEQVDKTKDDIIMWANYRLQ----------NKPVSMVALGNTS-TVPNVSYIEEKLNQ------------------------------------------------------------------ | |||||||||||||
6 | 1q2lA1 | 0.16 | 0.05 | 1.73 | 1.05 | HHsearch-2 | AIRLDNGMVVLLVSDPAVKSLSALVPVGSLEDPEAYQGLAHYLEHMSLMGSKKGGSHNASTAPYRTAFYLEVENDA--LPGAVDRLADAIAEP------LLDKKYAERERNAVNAELTMARTRMRMAQVSAETNPAHPGSGGNLETLSVQQALKDFHEKY---YSANLMAVIYSNKPLELAKMAADTFGRVPNKESKKPEITVPV------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
7 | 5cioA | 0.11 | 0.10 | 3.72 | 1.29 | Neff-PPAS | SWQLDNGLAVRAISTPGAEAAAALVRIGSFQAPAAWPGLAHLLEHMLFRTQAAGGRLNATTQATQTAFFFEVGAD--PLAEGLARLSDMLAAPQ------LAAEAIAQEIEVIDAEYRLLRGETRCEAAQRQMFSGFFHIGSRAAFGSDISALQQALRQFHHHYYRAPLWLQGPQSLEQLHALAQRYGGGLPSGSETLP-PLAAGQDYTLSLPGAPQLRLVFTLPHCWLRRLERLLLDDAPGGLLARLRAHAWGDAVRLGYARCGEN--SALLSFIFTVNHGSASEAAHIESALLAWLQALNALTPGQLAHFGQLANRDFHRLPLDQLRARALGLPPTEQHDDWTRQLAMLMAAPRRRLAVLPEGGGETREPLPAGQAPLRHLHPDEAQPVLLLRPSSEEQACGLQAALRPEALSVERHQGVWLLQLAGSHGLICHGLNVHAQLKQQNDIAIRRLLAQLPAALNPYRRLSHLLYDFPYAITAEPQRL-----HPPVTLTESGAEHALLQFYPLQSLARLYAPRYFQRLRVRNVGYVVQCTFHRCTHVEGLLFALQRQLTDEFLQQMHHELTHV-------SVGELEQTQQALQQNL | |||||||||||||
8 | 4nnzA | 0.13 | 0.08 | 2.79 | 1.41 | HHsearch | EFSLDNGLKVIVREDHRAVVVSQLWRIGSSYETPGLTGLSHALEHMMFE-------ENAFTTDDYTAYYQVLARDR--LPVALEMEADRMAHL------SLPVDQFKSEIEVIKEERRLRDNPALAFERFKAAAPASGYTIGWMADLQTIDDLRHWYESW---YAPNNATVVVGDVTAEVKTLAKRYFGEIPWRQLPPARKPLAEPGERRLK---------L------------------------YVRTQLPNLIMGFNVPSL----------------GSSENPREVNALRLIGA--LLDG------------------GYSARLASRLEREEVAGASTYYDA------FNRGDSLFVLSATPNKGKTLE-----QVEAGLWK------------------Q------LDDL----KQNP------PSAAEIERVRAQAGMV-YEKDSIAAQASSIGQLESVGLKLIDQDLEALKAIQKAARTFTP-----SRLTLAQVLPV-------------------------------------------------------------------------------------------- | |||||||||||||
9 | 1bcca | 0.10 | 0.07 | 2.49 | 1.18 | PROSPECTOR2 | YSQLDNGVRVASEQSSQPTCTVGVWDAGSRYESEKNNGAGYFLEHLAFKVESMGAHLNAYSSREHTAYYIKALSK--DVPKAVELLADIVQ------NCSLEDSQIEKERDVIVRELQENDREVVFNYLHATAFQGTGLAQSVEGPSENIRKLRADLTEYLSTHYTAPLAAAGGVEHQQLLELAQKHFGGVPFTYDDDAVPTLSKC-------RFTGSQIRHREDGL-----------------------PLAHVAIAVE----------------GPGWAHPDLVALQVANAII-------------------------------------------------------------------GHYDRTYGGGLHSSSPLASIAVTNKLCQSFQTFSICYSETGLFGFYFVCDRMSI--------------DDMMFVLQGMRLCTSISESEVLRGKNFLRNALVSHLDGTTPVCEDIGRELLTYGRRIP--------------------------------LEEWEERLAE-----------------------VDARMVREVCSKIYDQCPAVAGPGPIEQLPDYNRIRSGMFWLR | |||||||||||||
10 | 2g47B | 0.13 | 0.04 | 1.40 | 0.64 | SAM | -LELANGIKVLLISDPTTDKSSLDVHIGSLSDPPNIAGLSHFCQHMLFLGTKKYPSSNAFTSGEHTNYYFDVSH--EHLEGALDRFAQFFL------CPLFDESCKDREVNAVDSEHEKNVMNWRLFQLEKATGNPSKFGTGNKYTLETRPDVRQELLKAYYSSNLMAVCVLGRESLDDLTNLVVKLFSEVENKN----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |