>PF03409 (358 residues) EDGANLYLASNDDNKVLMNIKITTGGKTFSLDQLNDFNDDGSPKSIKISGGLDLSTTNID SVTNKLTGYLHVTTRRQADDSNFHVYVIKTQHFISASSMKSTVVILNTQYLTCLDTNQPL KNSYVTQMDHSSNTNLYFQWGIPAANWTDVTNNVFFSNPINLKNDTFTARVFFNHVEPIQ VGLDFWYFTVMGPINMIIENKYVNDLTYQTTAANTTGLVMTDYIFYEHTVNFQPDRTKTG SSGFIERSFPTVDVGYYMESGPALVSDYVHGTGPSDGTNWTPQQADKLTVNSSTPVPGTF YCQYFTFTGDLLPTTTPQTSTLAPTTTAQQTSMAVSTTTVATTTKESSDLLSMKIIIL |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | EDGANLYLASNDDNKVLMNIKITTGGKTFSLDQLNDFNDDGSPKSIKISGGLDLSTTNIDSVTNKLTGYLHVTTRRQADDSNFHVYVIKTQHFISASSMKSTVVILNTQYLTCLDTNQPLKNSYVTQMDHSSNTNLYFQWGIPAANWTDVTNNVFFSNPINLKNDTFTARVFFNHVEPIQVGLDFWYFTVMGPINMIIENKYVNDLTYQTTAANTTGLVMTDYIFYEHTVNFQPDRTKTGSSGFIERSFPTVDVGYYMESGPALVSDYVHGTGPSDGTNWTPQQADKLTVNSSTPVPGTFYCQYFTFTGDLLPTTTPQTSTLAPTTTAQQTSMAVSTTTVATTTKESSDLLSMKIIIL | |||||||||||||||||||
1 | 3amrA | 0.11 | 0.08 | 2.71 | 1.37 | CNFpred | PQNSKLITTNKK-----SGLVVYSLKMLHSYNTG-------KLNNVDIRYDFPLN--------GKKVDIAAASNRSEG-KNTIEIYAIDGNGTLQSMT-EVYGFTLYHSQ---------TGKYYAMVTGK--EGEFEQYELKAD------------NGYISGKK---VRAFKMN-SQTEGMAADRLYIAEEDEAIWKFSAEPDGNGTVIDRARDIEGLTIYYAADGKGYLMASSQ----GNSSYAIYDRQKNKYVADFRITDGPETDGTSD-------------TDGIDVLGFGLPFGIFVAQDGE---------------------------------------------------- | |||||||||||||
2 | 3n7kA | 0.09 | 0.09 | 3.30 | 1.07 | PROSPECTOR2 | NDSKILSLQNRKN-----TLVDTSGYNAEVSEEGDVQLNPIFPFDFKLGSSGKVIVTQNENIVYNISFWIRINKWVSNLPGYTIIDSVKNNSTLKQNEDSEQSINFSYDISNNAPGYNKWFFVTVTNNMMGNNGKLIDTIKVKELTGINFSKTITFE--INKIPDTIT-----SDSDNINMWIRDFYILQYTNVVKDYWGNDLRYNKYYMVNIDYLNRYMYANSRQIVFNTRRNNNDFNEGYKIIIKRIRGNTLYFDMTINNKAYNLFMKNETMYADNHSTEDIYAIGLREQTKDINYYYASQIFKSNFNGENIIGTYRFRLGGDWYRHNYLVPTVKQGNYASLLESTSTHWGFVPVS | |||||||||||||
3 | 4indA | 0.13 | 0.11 | 3.99 | 0.87 | SPARKS-K | NAKVKYYYKLSEDLDAFVNISYLLYGNTKIVSAPVVPLGPNASIIIELQEGIRIKVYNTNSFSVTVTPFFYSIGANS----EFEIYDIFNIYYIQLPPG-LAILEFSLERVFEKGN----RINIPKIIHTSGNGYISFRL---------RKGTYAIKMPYSYNNTTSTT----------FTNFQFGTISTSATIPLVISSIPA---NGSGSGTFLVYLKITGDYE-DVKFSVTYGGGLGVPFTFGLEVEEINE----LVENTNFVTQSVTLSGSQVTQSILNVQGSYASVSGLTTAVTQCQLQATNLNRSTTYSTVWDFIAGGSSTPPSWDIRESSTSSVTITLILVYEQIAGELSHH | |||||||||||||
4 | 2oitA | 0.11 | 0.09 | 3.30 | 0.60 | FFAS-3D | -KFPIHHLALSCDNLTL-SACMMSSEYGFDVRTFSNEAKQQKRPFAYHKLLIDMKWNPTVPSM-----VAVCLA-----DGSIAVLQVTETVKVCATLQNGTVVQYLPTLQEKKVIPCPPFPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMA---LLPKKEEKHPEIFVNFMEPCYGSCHHYYLSYIEEWDLVL---------AASAASTEVSILARQSDQINWESWLLEDSDDSLPMGVVVDYTNQVEITIS-------DEKTLPPAP-------------VLMLLSTD---GVLCPFYMINQNPGVKSLIKTPERLSLEGERQPKSPGST---------------------- | |||||||||||||
5 | 5j6yA | 0.11 | 0.04 | 1.50 | 0.27 | HHpred | ----------------LVGEYYGTNSQLNNISDFRALEADTHLQEFLGSDTLSTDPGDNTDGGIYLQGYVYLE-A---GTYNFKVTAINGNPVATVDNSVYTSFTIS---------ESGYQAIDMIWWDQGGDYVFQPTLSADGGTYFVLDSAILSSTGET----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
6 | 3n7kA | 0.10 | 0.10 | 3.61 | 0.74 | MUSTER | NDSKILSLQNRKN-----TLVDTSGNAEVSEE--GDVQLNPIFFDFKLGSRGKVIVTQNENIVYNMYEWIRINKWVVKNNSGWSIGIISNFLVFTLKQNEDSEQSINFSYDISNNAPGYNKWFFVTVTN-NMMGNMKIYIGVKELTGINFSKTITFEINKIPDTITSDSDNINMWIRDFYIFQYTNVVKDYWGNDLRYNKEYYMYLNRYMYANSRQIVFNTRRNNNDYKIIIKRIRGNTGGDILYFDMTINNKAYNLFMKNETMYADN-HSTEDIYAIGLREQTKDIFQIQPMNNTY-YYASQIFKSNFNGENISIGTYRFRLGGDWYRHNYLVPTVKQGNYASLLESTSTHWGFVPV | |||||||||||||
7 | 1qlgA | 0.11 | 0.08 | 2.71 | 1.32 | CNFpred | PQNSKLITTNKKS-----GLAVYSLKMLHSYHTG-------KLNNVDIRYDFPLN--------GKKVDIAAASNRSEG-KNTIEIYAIDGNGTLQSI-DEVYGFSLYHSQKT------GKYYAMVTGKE----GEFEQYELNAD--NGYISGKKVRAFKMN--------------SQTEGMAADSLYIAEEDEAIWKFSAEPDGNGTVIDRAPDIEGLTIYYAADGKGYLLASSQ----GNSSYAIYERQQNKYVADFQITDGPETDGTSD-------------TDGIDVLGFGLPFGLFVAQNGE---------------------------------------------------- | |||||||||||||
8 | 6dc6A1 | 0.15 | 0.03 | 1.04 | 0.49 | HHsearch-2 | ----------------------------------------------------------------------------------------------------------------------QPLSAMVSMVTKDNPGVVTCLHGFESG-----------------------DFVSFSEVQGMELNGQPMEIKVLGPYTFSIC----DTSNF--SDYIRGGIVSQV---------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
9 | 5ny0A | 0.11 | 0.09 | 3.41 | 0.98 | Neff-PPAS | --TDNITLTSAIETNVSRDVTIYGNGKYINATDGNGHNTKSYTVNLTIE-KATLYNQSQ-------YGFVHMNDE---GTDNITYKNITAYVWSQTHVGTKTLSLEGTVNFYSVPSYTVGGQTYSTDAFKIGDTTPAIYVS----------NEINIADNANIALENSATKIDIWMIADIGIHPHTTALTIGNNATLTMENGNNSALNIKLDGDTSNSFTVGEKLSAKVDNVRILPYEDSNTANVSFA----KGSDVTLHAGTGSNLRMGASISNQIDFN------GKATFIKDSEFDYYWNDQQKTGSTGVANFNPGSNVLFQAGPGASNVNTY------------------------ | |||||||||||||
10 | 6dc6A1 | 0.15 | 0.03 | 1.04 | 0.37 | HHsearch | ----------------------------------------------------------------------------------------------------------------------QPLSAMVSMVTKDNPGVVTCLHGFESG-----------------------DFVSFSEVQGMELNGQPMEIKVLGPYTFSIC----DTSNF--SDYIRGGIVSQV---------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |