>PF03381 (288 residues) LYIAADRVQQVMFDYTTCDKSNAPANMAWSAATNTCTITFTIDKPFVKPVFLYYRLTSFY QNHRRYVKSYDSSQLRGDVVTASSLSDTCSPIKQPANSSNVQYYPCGLIANSMFSDNILD PVRTSDSYTYVFTEKGISWPSDASKYRTSKLFSEKTDQEIRTSILPPPAWRTGFKWKGYD QGYNKTNFPDLATWERFQVWMRTAGLPNFRKLWGRNDSEDMPAGTYTIQIQSNFEVARFG GTKSVVISTVSLIGGKNTFLGVAYIVVGVVCWAFGLAFLARHLIRPRK |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 | | | | | | | | | | | | | | | |||||||||||||
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Seq | LYIAADRVQQVMFDYTTCDKSNAPANMAWSAATNTCTITFTIDKPFVKPVFLYYRLTSFYQNHRRYVKSYDSSQLRGDVVTASSLSDTCSPIKQPANSSNVQYYPCGLIANSMFSDNILDPVRTSDSYTYVFTEKGISWPSDASKYRTSKLFSEKTDQEIRTSILPPPAWRTGFKWKGYDQGYNKTNFPDLATWERFQVWMRTAGLPNFRKLWGRNDSEDMPAGTYTIQIQSNFEVARFGGTKSVVISTVSLIGGKNTFLGVAYIVVGVVCWAFGLAFLARHLIRPRK | |||||||||||||||||||
1 | 6h9cZ | 0.13 | 0.09 | 3.11 | 1.20 | SPARKS-K | ------QTQEYTLSHTGLLGSSKVTTASNQTQRETAIISFEVPRKFSE---IEYVGQRFVP--------RTTEEITGTA-NDDTVVQNIQPIEEDMADQDYPVV----VA---YNDEVTLATDPADGDTVKLW--PIMGDGEVQFRLVNQ--FGQEEGRVYPWATPLYRWHDFPGREINLHGWQENETVEVLDAPQAITW----------------EDADYPEGQYVSTFEQDVEITL-------------------------------------------------- | |||||||||||||
2 | 5zakA3 | 0.10 | 0.08 | 3.12 | 0.39 | FFAS-3D | ----DQPCYLYVIGMVLPDELNFRRRKLYPPEDTTRCFGILTAKPIPPHFPVYVTISMLSLQMLELITRLHQYIFSH----ILRLEKPALEFKPTDADSAYCVLPL---------------NVVNDSSTLDIDFKFMEDIEKSEARIGIPSTKYTFKLEDYQDRYRNFDQPHRFYVADVYTDLTPLSKFPSPEYETFAEYYKTKY-----------NLDLTNLNQPLLDVDHTSSRLNLLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQ-- | |||||||||||||
3 | 3nkgA | 0.11 | 0.06 | 2.03 | 0.32 | HHpred | --------------------------IDLSQAGSVVEKEVKIEESW---SYH-LILQ-FAVHDRKEDGGLDGWKFLGFNSYDPRDGKQVGYVDYR--------LAKSELG--------DLIDEDCDGTVVPITIHQI---------NQ-------------------DNTKK------L---IADNLYTKGN------GSGA------YTRDITTIS---LDKGKYIFRIENIEAFSEI-GRKVDFTIYINK------------------------------------ | |||||||||||||
4 | 3osqA | 0.10 | 0.09 | 3.21 | 0.84 | MUSTER | RHNIEDGGVQLAYHYQQNTPIGDGPVLLPDNHYLSTQSKLSKDPNEKRDHMVLLEFVTAA----------------GITLGMDELYKGVSKGEELFTGVVPILV-------------ELDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLVQCFSRYPDHMKQHDFFKSAMPEGYIQERTIFFK----------DGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNFNGGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNAD | |||||||||||||
5 | 6ekvA | 0.09 | 0.05 | 1.85 | 0.56 | CNFpred | -----------------------------------------------TQAAFGISFPLFIEH---------------------------------------FLKQALLSSQFISVDDIVADIN---TLTITNNK-QIIFGKVENSD--------------------------------------GKNVDSSLKPGKLKLSLQN---NLIVLELFDLTWEQGRGVTGHFDFRQEYELTLESEKQIPILKVH-EIEYYVEEAQWKANEDMIVSAVVGTVFSMILGAGMKL | |||||||||||||
6 | 2kluA | 0.23 | 0.03 | 0.87 | 0.62 | HHsearch-2 | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GPLVPRGSMALIVLGGVAGLLLLGIFFSVSRHRRR | |||||||||||||
7 | 3p24A | 0.11 | 0.10 | 3.65 | 0.94 | Neff-PPAS | ILKDNGFNRQVHVSMDKRTKIQLDNENVRDSTNFILGDEFAVLRFYRNGESISYIAYKEAQMMNEIAEFYAAPFKKTRAINEKEAFECIYDSRTRSAGKYPVSVKINVDKAKYINDYIKTPQVTRAVVICLRENGSTVYPNEVSAQMQDAANSVYAVHGLKRY--------VNLHFVLYTTEYACPSGNADEGLDGFTASLKANAEGYDDQIYFLIRWGTWDNNILGISWLNSYNVNTASDFKASGMSTTQL------------MYPGVMAHELGHILGANHADDPKD | |||||||||||||
8 | 2l2tA | 0.11 | 0.01 | 0.50 | 0.30 | HHsearch | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------STL--PQHARTPLIAAGVIGGLFILVIVGLTFAVYVRRK- | |||||||||||||
9 | 2cn2A | 0.08 | 0.06 | 2.33 | 0.78 | SP3 | IYVGVADKNESIYRSTD--GGVTWKAVPGQPKGLLPHHGVLASNGLGDGKGQVWKFNT---------RTGEWIDITPIPYSSSDNRFCFAGLAVDRQNPDI---------------IVTSNAWWPDEYIFRSTDGGATWKNIWEWGYPERILHYEIDISAAPWLDWGTEKQLPEINPKLGWIGDIEIDPF--------------------------NSDRYVTGATIYGCDN--LTDWDRGGKVKIEVKATGIEE----------------------CAVLDLVSPPE | |||||||||||||
10 | 1pv1A | 0.07 | 0.06 | 2.28 | 0.91 | PROSPECTOR2 | MEFSVCGGRLIKLSHNS------------NSTKTSMNVNIYLPKHYYAPTVFY--LSGLTCTPDNASEKAFWQFQDEVANDPEGSWDFGQGAGFYLNATQEPYAQHYQMYDYIHKELPQTLDSHFNKLD---FLDNVLKGYSGKRYKIVNPSNVPWGQKAFKGYLGEWLIKNIRHVGDDRVGDSDPFLEEHLKPELLLEAVKATSWQ----------------DYVEIKK---VH------------------GFDHSYYFVSTFVPEHAEFHARNL--------GLI | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |