Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280
| | | | | | | | | | | | | | |
| Seq | ITMADYLLLENTKFHKTATRAPKIKKVLLSLLKDRPEIWDRKAQFSAKNWQNLGVEVYERTGYIVRSNDLHKMLRTAKVVLKNKLRTCIGIKKLDRAATETELWKWEYYPHFIYYRETLGHFEANLRGEPWDGEAHIDDDDDDIIYEGYWEADKNSSKLTSETQDSVDETIVEEVPLEPDTNVFDREEEVVTFRRPEAFARAVDNHFGPPTEHLPDSSAKIYSTNIKSASCAPESTEPPKSDNSAQHIGEQVHRLFAQYPERSKLFRETLFKTILALEEPEYEHAAEVFTDLAQSE |
1 | 5ue0A | 0.10 | 0.09 | 3.23 | 0.75 | SPARKS-K | | -------------SLLLDDVDNEMAAIAMQGFRSMIEQFNVNNPATAKELQAMEAQLTAMSDQLVGIQAIKDALAQALKGLATAMGQVAFAAGGSAGTAGTVQMNVQLYKTAFSYAAALSDGYSALNSLYSESRS-GVQSAISQTANPALSRSVSRSA---------------DASQRAAETIVRDSQTLGDVYSRLQVLDSLMSTIVSNPQ----------ANQEEIMQLTASISKAPQSVDSLQKFAAQLEREFVDGERSLAESQENAFRKQPAFIQQVLVNIASLFSGYL--- |
2 | 6decM | 0.10 | 0.09 | 3.50 | 0.88 | FFAS-3D | | --LEVIFADLARSWALYEDEGVIRCYLLLHILTDAPEVCKKMCKRNEFESVLALVAYYQMEHRASLRLLLLKCFGAMCS-LDAAIISTLVSSVLPVELARDMQTDTQDHQKLCYSALILAMVFSMGEAVPYAHYEHLGTPFAQFLLNIVEDGLPTTEQLNLHLPAADQNVIMAALSKHANVKIF-----------SEKLLLLLNRGDDPVRIFKHEPQPPHSVLKFLQDVFGSPATAAIFYHTDMMALIDITVRHIADLSPG-DKLRMEYLSLMHAIRTTPYLQLQAILRRILNEE |
3 | 1vt4I | 0.15 | 0.14 | 4.53 | 0.42 | HHpred | | -QVTDFLSAATTTHISLMLTPDEVKSLLLKYLDCRPQDLPREVLTNPRRLSIIAESIR--DG--------LATWDNWKHVNCDKLTTIIESNVLEPAEYRKMFDRLSVFPPSAHI----PTILLSLLHKYSLVEKQPKESTIPSIYLELKVKLENEYALHSIVD---HYNIPKT--FD-SD-DLIPP--YLDQ---YFYSHHLKNITLFRMVFLDFR---FLEQKIRHDSTAWNA---SGSILNTQQLKFYKPYICDNDP-KYERLVNAILDFLPKIEENKYTDLLEAHKQVQRG- |
4 | 6etxG | 0.08 | 0.08 | 3.28 | 0.84 | MUSTER | | YHISKFIYRHGQIRVFNHSRDRWLRVLSPFAPDYIQRSLFHRKGINESFLRFIDISPAEMANLMLQGLLARWLALFLSLKASYRLHQLRSWGAPEGESHQRYLRNKDFLLGVNFLSFPNLCSCPLLKSLVFSSHCKAVSGYSDQVVHQRRSATSSLRRCLLTELPSFLCVASPRVTAVPLDSYCNDRSAEYERRGAPELAADWLNRRSQFFPEPAGGLWSIRPQNGWSFIRIPGKESLITDSGKLYALDVLLTRLKSQG-RMIDLLEEYMVYTYMRLDSSKISERRDMVADFQNRN |
5 | 5ctqA | 0.14 | 0.09 | 3.21 | 0.75 | CNFpred | | --YQAYIDFEMKI-----GDPARIQLIFERALVENCL--------VPDLWIRYSQYLDRQL----VKDLVLSVHNRAIVALWSRYLLAMERHGVDHQVISVTFEKAL-FIQATDYVEIWQAYLDYLRRRVDF----KQDSSKELEEL------------------------------------------------RAAFTRALEYLKQEVEERFNESGDP-------------------------CVIMQNWARIEARLCNNMQKARELWDSIMTRG----NAKYANMWLEYYNLE |
6 | 1vt4I | 0.14 | 0.14 | 4.70 | 0.84 | HHsearch-2 | | SRLQPYLKLRPADFKIFNLKNETVLEMLQKLLYQIDPNWTSRSDHSKLRIHSIQAELRRLLKLLVLLKALTTRFKQVTDFLSAATTTHISSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATNCDTTIIESSLEPEFPPSAHPLIWFDV--------IKSDVMVNLVEKQPKESTISIPSIYLELSIVDHYLIPPYRMVF-LDFLEQKIRHDSTAWN---ASGSILNTQQLKFYKPYICDNDP-KYERLVNAILDFLPKIEENKYTDLLEAHKQVQRGG |
7 | 6el1O | 0.06 | 0.06 | 2.54 | 1.13 | Neff-PPAS | | QFKTTGVEVLQEKALRVSLYSQRLDVIVRESLSSLQVKLENTLLTYFTTLEEIDEALISQDIDEESKSEMRKERINIIKNLSNDITQLKQLFIEKTELLDKSSSDLHNVVIIEGTDKVLQAEQLRQKQ--LTEDIATKELERKEIEKKRDKIIEALDVIREHNLVDAFKDLIPTGENLSELDLAKPEIELLKQSLEITKKLLGQFSEGLKYIDLTDARKKLDNQIDTASTRLTELNRQLEQSEKLIAGVNAVIKIDQEKVVEAEKLSRAWHIFIHEITALQGTKQQIYLESLIKQL |
8 | 5cqqA | 0.14 | 0.03 | 1.15 | 0.72 | HHsearch | | ---------------LTPRFTAEEKEVLYTLFHLHEEVIDIKHRKVRETWDKIVKDFNSHPSAMRNIKQIQKFWLNSRLRKQY----P-----Y---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
9 | 6etxG | 0.07 | 0.07 | 2.80 | 0.75 | SP3 | | NLVMQFRKVCNHPELFERQETWSPFHISLKPYHISKFIYRHGQIRVFNHSRDRWLRVLS----PFAPDYIQRSLFHRKGINEESCFSFLRFIDISPAEMANLMLQ----GLLARWLALFLSLKASYRLHQLRSWGAPEGESHQRYLRNKDFLLGVNFPLSFPNLCSCPLLKSLVFSSHCKAVSGYSDQVVHQRRSATSSLRRCLLTELPSFLCVASPRVTAVPLDSYCNDRSAEYERRVLKEGGSLAAKQCLLNGAPELAADWLNRRSQFFPEPAGGLWSIRPQNGWSFIRIPGKE |
10 | 3l0mA | 0.10 | 0.09 | 3.40 | 0.98 | PROSPECTOR2 | | PLGSPYSDAKALDEVAKIRELGVQRVTRIENLENAKKLWDSLEKGNISGYLKAANELHKFKEKNLKEDDLPKGYAILQSLWGAASDYSRAAATLTESTVEPGLV-------------------SAVNKSAFFDCKLSPNERATPDPDFKVGKSKILVGIQFIKDVADPTSKIWHNTKALNHKIAAIQKLERSNNVNDETLESVLSSKGENKYATKDEGREHRYTASTENFKNVKEKYQQRGDALKTEILADFKDKLAEDEQSLKQIVAELEYRILAKGQSSFEKVEETRESIKSQE |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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