Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180
| | | | | | | | | |
| Seq | QTTIAYSLHHPRASLTSALPDAAQVVHVFESGTRAVLTRGRARQDRLPRGGVVIQHTPIGLLVIIDCRAEFCAYRFIGRASTQRLERWWDAHMYAYPFDSWVSSSHGESVRSATAGILTVVWTPDTIYITATIYGTAPEAARGCDNAPLDVRPTTPPAPVSPTAGEFPANTTDLLVEVLREIQIS |
1 | 6n2cA2 | 0.09 | 0.08 | 3.05 | 0.67 | SPARKS-K | | FDFTTYGLFSFNNNIT------------VTTR--NMYSSSDITLRSDNNRDNIIVKNG---SFIFGGNNKNLMYTITFNGNNNNSLLFSDGTISALFCDTLDIRGSSNLVTINEFAYFKLNIWTDKMVLKSKLFGGDIEIRNDGILSADVGTVVYQIPY--------PTIPA-IIEEIKKNTFPT |
2 | 5ltdA1 | 0.11 | 0.07 | 2.56 | 0.52 | FFAS-3D | | -NFANFN------------QDFSCVSVGYSNGYKIYNCEPFGQ--------CYSKSDGSIGIVEMLFSSSLLAIVGMGEQHSLS-----PRRLKIINTK----RQTTICELTFPGAILAVKLNRERLVVTIYIYDINNMRLLHTIETPSNPNG-------------------------------- |
3 | 2ycbA2 | 0.15 | 0.12 | 4.02 | 0.31 | HHpred | | ----------------------------DNDWARLTAMGGFR---EVGRSCLYLQTP--NSRVLLDCGVNVAGGYLNHALDHSGFLPGYDGPVYCTAPTRDITLDYGE-VTDIAPDIRTLHNALGSAMAHLHVYTGDFKYEQSRLEAAANRFPRIETLVMESTGHESGHSDRRQLMEYVKRISP- |
4 | 5az4A | 0.10 | 0.10 | 3.76 | 0.74 | MUSTER | | KVNLDITLNGVRIQNAQSIDDAIAYINTFTAPTDTRDGTGVKAVKNKDGSGIDFVNDNANINLVVANTNTAGELWNAVWNNNNQNNGNGQAGTPTINKNGSSLWTATNITFTPAATNVQLTGGLNAQIITAHKY---IYSSNPVDIGPMYNPDGGPAFQPGANATTRPTEPGSAAYWDAVNGGLL |
5 | 3bwsA | 0.07 | 0.04 | 1.58 | 1.04 | CNFpred | | --GFVETISIP---------HNELWVSQMQANAVHVFDLKTL------AYKATVDLTKWSKILLYDP-IRDLVYCSNW----------ISEDISVIDRKTKLEIR---KTDK-IGLPRGLLLSKDGKELYIAQFSA------------------------------------------------- |
6 | 4ojcA1 | 0.16 | 0.05 | 1.62 | 0.34 | HHsearch-2 | | KATFVYAAYDFVN-GYWVEKDKTKIRSQLDGGTQDAVTGTNQISIHLESQNLVFFHNA------------------------------------------------------------------------------------------------------------------------------- |
7 | 2vbeA4 | 0.07 | 0.06 | 2.66 | 0.86 | Neff-PPAS | | -FKNAVYVHDCLDLHEQLDLDYCGSTGVVIENVNGGFSFSNSWIAADADGT-----EQFTGIYFRTPTSTQSHKIVSGVHINTANKNTAANNQSIAIEQSAIFVFVSGCTLTGDEWAVNIVDINECVSFDKCIFNKPLRYLRSGGVSVTDCYLAGITEVQKPEGRYNTYRGCSGV---------- |
8 | 2c4rL3 | 0.15 | 0.09 | 3.09 | 0.58 | HHsearch | | --------------------IES------------QIESAFQREVRLPGGSIVIDSTEALTAIDINSARG------DIEEARQLRLRDL-GGLIVIDFIDMTPVRHQRAVENR----LREAVRQDR--ARIQISHISRFGLLEMS--R--------QR-L-------SPSLGESSH--------- |
9 | 3qsqA | 0.08 | 0.08 | 3.18 | 0.55 | SP3 | | QFRVLLTVGPPMAPNTANSQNWVNKTIVPPENQYTVKIGIDLEHYTTMQGFTPVESVPIPGLYARVNNTKGVQQFKSSHTNNRTSFQVINYTSYFIRGAE-SGSNVSNLKIRDQTYHTPLQFTQGKWYLLTSTVMHDGPTSSGWVWMNQELTNNIAYRVDPGMMYLITPPPAASQLYFELHTVLP |
10 | 3qsqA | 0.04 | 0.04 | 2.14 | 0.80 | PROSPECTOR2 | | EQFRVLLTVGPPMAPIVPPENQYTVKIGIDLEHYTTTADFQPSDEPSPIPGLYARVNNTKKADVY-----GVQQFKSSHTNNRTTSFQVINYTSYFIRGAESGSNVSNLKIRDQTYHTPLQFTQGKWYLLTSTVMHDGPTSSGWVWMNQELTNNIAYRVDPGMMYLITPPPAASQLYFELHTVLP |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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