>PF03189 (450 residues) YLRVGAIAFGIGTMVYSGLEFGQYFELNASPGCSSIFIALTPAARMILSLVQMQFIFLNT SDLDMARHKVFARFGLMHMVATNLCEWLYVLVEETKHEIHHLAHTTHHKGDGFDTYSAIV TAATTPASTTTTTTESSDSSEELLDSALNHTLVRRSAGPEPAEYVECQRTNIMGSLVQNV SPFLFPCTIEYSLICAVILYEMWKKVKTIAEIDRTRRSSIKVQTGAGPKSAHHFSVDCSR AHRGMFGGILLTVLTIICLIMYFVLYDEPGYEYFAIQEVTIAETLMYALTAVAVVVAMLK MRDLKYQRKKNDHHSGSISLDCTLLVLAQTGVYVYGMFSIVGSYFSMRQGVPGAREGLVA ELFSLIQTSIQTLFILNAVWRKCRGAQQNRTKPGREIVTFLLVANMAMWFINTLIKGRAS FRPSHLDFFGTWAWTVITHVSMPLAIFYRF |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | YLRVGAIAFGIGTMVYSGLEFGQYFELNASPGCSSIFIALTPAARMILSLVQMQFIFLNTSDLDMARHKVFARFGLMHMVATNLCEWLYVLVEETKHEIHHLAHTTHHKGDGFDTYSAIVTAATTPASTTTTTTESSDSSEELLDSALNHTLVRRSAGPEPAEYVECQRTNIMGSLVQNVSPFLFPCTIEYSLICAVILYEMWKKVKTIAEIDRTRRSSIKVQTGAGPKSAHHFSVDCSRAHRGMFGGILLTVLTIICLIMYFVLYDEPGYEYFAIQEVTIAETLMYALTAVAVVVAMLKMRDLKYQRKKNDHHSGSISLDCTLLVLAQTGVYVYGMFSIVGSYFSMRQGVPGAREGLVAELFSLIQTSIQTLFILNAVWRKCRGAQQNRTKPGREIVTFLLVANMAMWFINTLIKGRASFRPSHLDFFGTWAWTVITHVSMPLAIFYRF | |||||||||||||||||||
1 | 6nf4A | 0.23 | 0.17 | 5.43 | 3.25 | SPARKS-K | WIRGGLTMLALLSLIMDAFRIGYFV---GYHSCISAALGVYPIVHALHTISQVHFLWFHIK-DVIKKYETFERFGVIHAVFTNLLLWCNGVMSETEHFM---------HTS-------------------------------------------------------------VCSMFSTSLYYLYPFNIEYHIFVSAMLFVMWKNI---------------------------------GLLLGPLGGLVALASSVSVLVVYLIHLKTEEMHEAAVSMFYYYGVAMMACMCVGSGTGLLVYRME--NRPMDTGSNPARTLDTELLLASSLGSWLMSWCSVVASVAEAGQKSPSFWTSLTYSLLLVLEKCIQNLFIVESLYR-----PGRKRQILKNICMFLFMCNISLWILPAFGCRPQYDNPLENETFGTSVWTTVLNVAIPLNLFYRM | |||||||||||||
2 | 6nf4A | 0.23 | 0.17 | 5.43 | 4.05 | FFAS-3D | WIRGGLTMLALLSLIMDAFRIGYFVGYHS---CISAALGVYPIVHALHTISQVHFLWFHIK-DVIKKYETFERFGVIHAVFTNLLLWCNGVMSETEHF----------------------------------------------------------------------MHTSVCSMFSTSLYYLYPFNIEYHIFVSAMLFVMWKNIGL---------------------------------LLGPLGGLVALASSVSVLVVYLIHLKTEEMHEAAVSMFYYYGVAMMACMCVGSGTGLLVYRMEN--RPMDTGSNPARTLDTELLLASSLGSWLMSWCSVVASVAEAGQKSPFSWTSLTYSLLLVLEKCIQNLFIVESLYRP-----GRKRQILKNICMFLFMCNISLWILPAFGCRPQYDNPLENETFGTSVWTTVLNVAIPLNLFYRM | |||||||||||||
3 | 6nf4A | 0.22 | 0.16 | 5.12 | 10.14 | HHpred | WIRGGLTMLALLSLIMDAFRIGYFVGY---HSCISAALGVYPIVHALHTISQVHFLWFHI-KDVIKKYETFERFGVIHAVFTNLLLWCNGVMSETEHFMH-----------------T----------------------------------------------SVC-------SMFSTSLYYLYPFNIEYHIFVSAMLF----VM-----------------------------WKNIGLLLGPLGGLVALASSVSVLVVYLIHLEKTEMHEAAVSMFYYYGVAMMACMCVGSGTGLYRMENRPMDTGS----NPARTLDTELLLASSLGSWLMSWCSVVASVEAGQKSPSFSWTSLTYSLLLVLEKCIQNLFIVESLYRP-----GRKRQILKNICMFLFMCNISLWILPAFGCRPQYDNPLENETFGTSVWTTVLNVAIPLNLFYRM | |||||||||||||
4 | 6nf4A | 0.24 | 0.18 | 5.55 | 2.43 | MUSTER | WIRGGLTMLALLSLIMDAFRIGYFV---GYHSCISAALGVYPIVHALHTISQVHFLWFHIKDV-IKKYETFERFGVIHAVFTNLLLWCNGVMSETEHFMH----------------------------------------------------------------------TSVCSMFSTSLYYLYPFNIEYHIFVSAMLFVMWKNI---------------------------------GLLLGPLGGLVALASSVSVLVVYLIHLKTEEMHEAAVSMFYYYGVAMMACMCVGSGTGLLVYRM--ENRPMDTGSNPARTLDTELLLASSLGSWLMSWCSVVASVAEAGQKSPFSWTSLTYSLLLVLEKCIQNLFIVESLYRP-----GRKRQILKNICMFLFMCNISLWILPAFGCRPQYDNPLENETFGTSVWTTVLNVAIPLNLFYRM | |||||||||||||
5 | 2a65A | 0.11 | 0.10 | 3.51 | 1.49 | CNFpred | ATRLGLILAMAGNAVGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGTTPAIFYNRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPP---------------------TDPDSILRPFKEFLYSYIGVPKGDEPILKPSLF-AYIVFLITMFINVSILIRGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWT---FEKLKDPGVWIAAVGQIFFTLSLGFGAIITYASYVRQDIVLSGLTAATLNEKAEVILGGSISIPAAVAFFGVANAVAIAK-------GAFNLGFITLPAIFSQTGGTFLGFLWF--------FLLFFAGLTSSIAIMQPMIAFLEDELK----------LSRKHAVLWTAAIVFFSAHLVMFLN-------KSLDEMDFWAGTIGVVFFGLTELIIFF | |||||||||||||
6 | 6nf4A | 0.21 | 0.16 | 5.00 | 3.44 | HHsearch-2 | WIRGGLTMLALLSLIMDAFRIGYFVGYH---SCISAALGVYPIVHALHTISQVHFLWFHI-KDVIKKYETFERFGVIHAVFTNLLLWCNGVMSETEHFMH----------------------------------------------------------------------TSVCSMFSTSLYYLYPFNIEYHIFVSAMLF----VM-----------------------------WKNIGLLLGPLGGLVALASSVSVLVVYLIHLEKTEMHEAAVSMFYYYGVAMMACMCVGSGTGLYRMENRPMDTGS----NPARTLDTELLLASSLGSWLMSWCSVVAVEAGQKSPS-FSWTSLTYSLLLVLEKCIQNLFIVESLYRP-----GRKRQILKNICMFLFMCNISLWILPAFGCRPQYDNPLENETFGTSVWTTVLNVAIPLNLFYRM | |||||||||||||
7 | 6nf4A | 0.24 | 0.18 | 5.49 | 3.67 | Neff-PPAS | WIRGGLTMLALLSLIMDAFRIGYFVGYHS---CISAALGVYPIVHALHTISQVHFLWFHIKDV-IKKYETFERFGVIHAVFTNLLLWCNGVMSETEHFMHT----------------------------------------------------------------------SVCSMFSTSLYYLYPFNIEYHIFVSAMLFVMWKNIG---------------------------------LLLGPLGGLVALASSVSVLVVYLIHLEKTEMHEAAVSMFYYYGVAMMACMCVGSGTGLLVYRMEN--RPMDTGSNPARTLDTELLLASSLGSWLMSWCSVVASVAEAGQSPSFSWTSLTYSLLLVLEKCIQNLFIVESLYRP-----GRKRQILKNICMFLFMCNISLWILPAFGCRPQYDNPLENETFGTSVWTTVLNVAIPLNLFYRM | |||||||||||||
8 | 6nf6A | 0.24 | 0.17 | 5.41 | 5.42 | HHsearch | WIRGSLLLFGTFSILLNVFQIGYSVIQI---NCKSKVEIVFPSIEILFVATQAFFLWHHS-KDCIQVQHNLTRCGLMLTIATNLLLWLLAVTNDSIHMEIESQ--------------L--------------------------------------------RTTTC-------KVFQKGYILLYPFNTEYCLICCSVLYVMWKNVGR----------------------------------FGPLLGAAAVIIGICVFMMYQIQATGSAPNYQVFVLYYSYYIVLLPLMCVVAIIGTIIHTLEK----------PTRSLDVVLLMGAALGQIAMSYFSIVAIVATNPRDM-LNSLILSYSVLLIFQYITQNIFIIDGL--------QWKRKALKEISFFLVLCNIILWIMPTFGAHPVFENGLQKSFYGYSTWFAIVNFGLPLSVFYR- | |||||||||||||
9 | 5ee7A | 0.09 | 0.07 | 2.75 | 1.24 | PROSPECTOR2 | YSSFQVMYTVGYSLSLAALLLALAILGGLSKLHCTANAIHANLFLSFVLKASAVLFIDGLLRTVSTWLSDGAVYCWLLVEGLYLHNLLGLNIFEMLRIDE----------------GLRLKIYKDYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITK-----------------------DEAEKLFNQDVDAAVRGILRNAKLKPVYDS---------------------LDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRT-------GTWDAYPERSFFSLYLGIGWGAPALFVVPWAVVKCLFENVQTNMGFWWILRFPVFLAILIFVRIVQLLVAKLRARQMHHTDYAFRLAKSTLTLIPLLGVHFVVFAFVTDEHR-----------SAKLFFDLALSSFAVLYRA | |||||||||||||
10 | 6nf6A | 0.24 | 0.17 | 5.41 | 4.52 | SAM | WIRGSLLLFGTFSILLNVFQIGYSVIQI---NCKSKVEIVFPSIEILFVATQAFFLWHHSKD-CIQVQHNLTRCGLMLTIATNLLLWLLAVTNDSIHMEIESQ------------------------------------------------------------------RTTTCKVFQKGYILLYPFNTEYCLICCSVLYVMWKNVGR----------------------------------FGPLLGAAAVIIGICVFMMYQIQATGSAPNYQVFVLYYSYYIVLLPLMCVVAIIGTIIHTLEK----------PTRSLDVVLLMGAALGQIAMSYFSIVAIVATNPRDML-NSLILSYSVLLIFQYITQNIFIIDGL--------QWKRKALKEISFFLVLCNIILWIMPTFGAHPVFENGLQKSFYGYSTWFAIVNFGLPLSVFYRM | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |