>PF03124 (326 residues) LQIWGGFLLMILMAWLFSLNCLVWAKFKVSYKFIFEFNEHDALDFKQYMVIPSLLLFIGG LTAWFSFEDFWPNHFSGYDFPWVFLAAAVAILFCPFDVFFLSARLWLLSTLTRLLLSGLY PVEFRDFFMGDILCSLTYSISNVSMFFCIYAQHWNDCSNCGSAKSRLLGFLQCVPSIWRF LQCFRRYADTGDWFPHLANMGKYTVSMMYYMSLSLYRIDTVNHYRALLIFWATTNSIYSI VWDVVMDWSLFQLDSKYFLLRDEITFKEPMIYYAAIIADVVLRFQWVFYALFPKQIQQSA ITSFGIAVAEVVRRFIWVFFRMENEH |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | LQIWGGFLLMILMAWLFSLNCLVWAKFKVSYKFIFEFNEHDALDFKQYMVIPSLLLFIGGLTAWFSFEDFWPNHFSGYDFPWVFLAAAVAILFCPFDVFFLSARLWLLSTLTRLLLSGLYPVEFRDFFMGDILCSLTYSISNVSMFFCIYAQHWNDCSNCGSAKSRLLGFLQCVPSIWRFLQCFRRYADTGDWFPHLANMGKYTVSMMYYMSLSLYRIDTVNHYRALLIFWATTNSIYSIVWDVVMDWSLFQLDSKYFLLRDEITFKEPMIYYAAIIADVVLRFQWVFYALFPKQIQQSAITSFGIAVAEVVRRFIWVFFRMENEH | |||||||||||||||||||
1 | 3gi9C | 0.09 | 0.08 | 3.06 | 1.20 | SPARKS-K | IAGRNLPETFILSGIYALLVAYSYTKLKIVSNAPIAFIHKAIGDNIITGALSILLWMSYVISIALFAKGFAGYFLPLNIAITEIGIVAFFTALNAVGRAEFFIVLVKLLILGLFIFAGLITIHPSYVGMIFASAIFFLSYM-GFGVITNASEHIENPKKNVPRAIFISILIVMFVYVGVAISAIDELIKASE-----------------NALAVAAKPFLGNLGFLLISIGALFSISSAMNATINVAYSLAKDGELPEFF-ERKVWFKST---EGLYITSALGVLFALLF-------NMEGVASITSAVFMVIYLFVILSHYILID | |||||||||||||
2 | 3rkoB | 0.07 | 0.06 | 2.46 | 1.52 | CNFpred | --NVSAIVGVGSVGLAALVTAFIGVDF-FNIGFNLVLDG----LSLTMLSVVTGVGFLIHMYASWYMRGEE--GYSRFFAYTNLFIASMVVLVLADNLLLMYLGWEGVGLCSYLLIGFYY--NGAAAMKAFVVTRVGDVFLAFALFILYNELGTLNFREMV-NMLMWATLMLLGGAVGKSATWLADAMAGPTPVSALIHAATMVTAGVYLIARTHGLFLMTPEVLHLVGIVGAVTLLLAGFAALVQ-----------------------TDIKRVLAYSTMSQIGYMFLALGVQ---AWDAAIFHLMTHAFFKALLFLASGSVILA | |||||||||||||
3 | 5y78A | 0.09 | 0.08 | 2.97 | 1.14 | Neff-PPAS | VHTLKVGFYFFLWYFFNFIFNIANKRTLNMWKY--------------PWVLSTIQLGVGALYCTFLWVLGLRTKPNVSKKLIKALIWPSLGHTLGHAATCMSFSLVISFTHVVKSAEPVFGAVGSALVLGEFFHPLTYLTLVPIVSGVALSAATELTFTWTGFITAMISNVAFVTRNITSKFTMVDFKNEKTLIAQNTYALITIISFFMELPFALLMEGIAGVSKAKLFGSIMFCSLFYHLYNEVSYLCLDNVS----------------PVSFSIGNTIKRVIIIFGSILVFRTPVTRLNFIGSTIAIIGTMLYSLAKAKLP--- | |||||||||||||
4 | 3wajA1 | 0.07 | 0.07 | 2.97 | 1.04 | PROSPECTOR2 | SVLVIAALISVKLPWYYYRLIENTIHNFPHRIWFDPFTYYPYGSGESLRAVLAFIPAIGGPVYLLFLQRSILGFNDHHIWEAFWQVSALGTFLKGHDLTARQMAYPILAFMFFAFVLAGFVNADRKNLSLVAVVTFAVSA-----LIYLPFAFNYPGFSTIFYSPFQLLVLLGSAVIAAAFYQIEKWNDVGFFERVGLGRKGMPLAVIVLTALIMGLFFVLTNAVLHFLFFFGMAGILYSAYRFLKRRSFPELWGQNRFAVVFDKLHFRVAFALLIALAAIYPTYILADAQSSYAGGPNKQWYDALTWMEKYDEYYHWIEAVAHQA | |||||||||||||
5 | 3l1lA | 0.07 | 0.06 | 2.67 | 1.20 | SPARKS-K | GIAIYGWLVTIIGALGLSMVYAKMSFLPGGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYILKDPWVLTITCVVVLWIFVLLNIVGVQAVATVLALIPIVGIAVFGWFWFRIQSTLNVTLWSFIG------VESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIALRVSASP------------FGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDG----LFPPIFARVNAGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGH | |||||||||||||
6 | 5k7vA | 0.08 | 0.07 | 2.64 | 0.93 | FFAS-3D | ----EEVVAEMIDILAESSKKSIEELAR---------AADNKTTEKAVAEAIEEIARLATAAIQLIEALAKNLASEEFMARAISAIA--------------ELAKKAIEAIYRLA-----DNHTTDTFMARAIAAIANLAVTAILAIAALASNHT-------TEEFMARAISAIAELAKAIEAIYRLADNHTTDKFMAAAIEAIALLATLAILAIALLASNHMAKAISAIAELAKKAIEAIYRLA-D-------------------NHTSPTYIEKAIEAIEKIAKAIEMLAKNITTEEYKEKAKSAIDEIREKAKEAIKRLEDNR | |||||||||||||
7 | 5tj5A | 0.19 | 0.13 | 4.37 | 0.30 | HHpred | -----------FLMTLAALSLVLNEKKKRGYGFLYN-GTENALLFSNSYKLSILMGFI-HMTYFFSLADIIGNFIPGLLFMQGIFGYLSVCIVYKWAVDWVKPAPGLLNMLINMFLSPGTI-D-------DELYPHQAKVQVF----------------------LLLMALVCIPWLLLVKP----LHFKFDMIHQVIHTIEFCLNCVSHT---A-------SYLRLWALSLAHAQLSSVLWTMTIQIAF--------------GFR-G--F-VGVFMTVALFAMWFALTCA---------VLVLMEGTSAMLRLHWVES------ | |||||||||||||
8 | 3wajA1 | 0.10 | 0.09 | 3.33 | 0.87 | MUSTER | ------SVLVIAALISVKLRILPWNSVFTWTVRLGGFDPFTYYPYGSYTHFGPFLVYLGSIAGIIFSATSGESLRAVLAFIPAIGGVLAILPVY-TREVFD--KRAAVIAAFLIAIVPGQFLQRSILGFND-HHIWEAFWQVSALGTFLLAYNRWKGHDLTARQSWGAGFIIAPIILAFMFFAFVLAGFVNADRKNLSLVAVVTFAVSALIYLPFAFNYPGSPFQLLVLLGSAVIAAAFYQIEKWNDVGFFERVGLGR-----------KGMPLAVIVLTALIMGLFFVLTNAVLHFGALFFFGMAGILYSAYRFFPEMALL---- | |||||||||||||
9 | 3rkoC | 0.10 | 0.08 | 3.03 | 1.49 | CNFpred | LAIDGLSLLMVVLTGLLGVLAVLCSW--------------KEIEKYQGFFHLNLMWILGGVIGVFLAIDMF---LFFFFWEMMLVPMYFLIALWGHK-YTQASGLVMLIAILALVFVHVWTFNYEELLNT-EYLLMLGFFIAFAVKMPVVP-----------LHGWLPDAHSQAPTAGSVDLAG-----------ILLKTAAYGLLRFSLPLFPNASA----EFAPIAMWLGVIGIFYGAWMAFA-----------------------QTDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHGLSAAGLFILCGQLYER | |||||||||||||
10 | 5tj5A | 0.17 | 0.13 | 4.24 | 0.96 | HHsearch-2 | GALPTIVTFPFMFMTLAALSLVLNEKKINGYGFLYN-GTENALLFSNSYKMSILMGF-IHMTYFFSLADIIGNFIPGLLFMQGIFGYLSVCIVYKWAVDWVKPAPGLLNMLINMFLSPGT-----------------------------------IDDELYPHQAFLLMALVCIPWLLLVKP----LHFKFDIIHQVIHTIEFCLNCVSHT---A-------SYLRLWALSLAHAQLSSVLWTMTIQIAFGFRG----FVGVFMTVA--LFAMWFALTCHSLRLHWVES--MSKPY---EPFAFEYKDMEV--------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |